| 1000 | 1357481 | Aaj2_m | anxiety in A/J 2 (mouse) | | | Not determined | | 6 | 4503823 | 48703611 | Mouse | n/a | region | qtl |
| 1000 | 1300767 | Aliq4_m | acute lung injury QTL 4 (mouse) | | | Not determined | | 6 | 36273332 | 70273435 | Mouse | n/a | region | qtl |
| 1000 | 1357520 | Axtq2_m | anxiety QTL 2 (mouse) | | | Not determined | | 6 | 4503823 | 48703611 | Mouse | n/a | region | qtl |
| 1000 | 11353841 | Bmiq3_m | body mass index QTL 3 (mouse) | | | | | 6 | 4503823 | 48703611 | Mouse | n/a | region | qtl |
| 1000 | 13208564 | Bmiq7_m | body mass index QTL 7 (mouse) | | | | | 6 | 24999999 | 79976983 | Mouse | n/a | region | qtl |
| 1000 | 1357539 | Bsbob3_m | BSB obesity 3 (mouse) | | | Not determined | | 6 | 36448456 | 70448576 | Mouse | n/a | region | qtl |
| 1000 | 26884414 | Bzwq12_m | bi-zygomatic width QTL 12, 16 week (mouse) | | | | | 6 | 3400000 | 139076998 | Mouse | n/a | region | qtl |
| 1000 | 14700690 | Ccs6_m | colon cancer susceptibility 6 (mouse) | | | | | 6 | 23776934 | 57776934 | Mouse | n/a | region | qtl |
| 1000 | 1300556 | Cia6_m | collagen induced arthritis QTL 6 (mouse) | | | Not determined | | 6 | 4464884 | 87403016 | Mouse | n/a | region | qtl |
| 1000 | 10043885 | Cia6c_m | collagen induced arthritis QTL 6c (mouse) | | | Not determined | | 6 | 44442805 | 71096451 | Mouse | n/a | region | qtl |
| 1000 | 1558984 | Cplaq9_m | circadian period of locomotor activity 9 (mouse) | | | Not determined | | 6 | 38646560 | 92584431 | Mouse | n/a | region | qtl |
| 1000 | 1357442 | Dbts1_m | diabetes 1 (mouse) | | | Not determined | | 6 | 18234147 | 73364675 | Mouse | n/a | region | qtl |
| 1000 | 10412107 | Desp4_m | despair 4 (mouse) | | | Not determined | | 6 | 20049830 | 54049830 | Mouse | n/a | region | qtl |
| 1000 | 12904940 | Edlmmq5_m | extensor digitorum longus muscle mass QTL 5 (mouse) | | | | | 6 | 19616346 | 53616346 | Mouse | n/a | region | qtl |
| 1000 | 4142271 | Egq8_m | early growth QTL 8 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | n/a | region | qtl |
| 1000 | 1301850 | Fglu_m | fasting glucose (mouse) | | | Not determined | | 6 | 17711598 | 51711719 | Mouse | n/a | region | qtl |
| 1000 | 10412157 | Fl1n_m | fatty liver 1 in NSY (mouse) | | | Not determined | | 6 | 45290993 | 128811995 | Mouse | n/a | region | qtl |
| 1000 | 12904952 | Gmmq4_m | gastrocnemius muscle mass QTL 4 (mouse) | | | | | 6 | 19616346 | 53616346 | Mouse | n/a | region | qtl |
| 1000 | 4141094 | Hrtr1_m | heart rate 1 (mouse) | | | Not determined | | | 36741463 | 70741463 | Mouse | n/a | region | qtl |
| 1000 | 1301266 | Lmr4_m | leishmaniasis resistance 4 (mouse) | | | Not determined | | 6 | 42093358 | 76093500 | Mouse | n/a | region | qtl |
| 1000 | 11040601 | Lmr4a_m | leishmaniasis resistance 4a (mouse) | | | | | 6 | 42093358 | 76093500 | Mouse | n/a | region | qtl |
| 1000 | 11040600 | Lmr4c_m | leishmaniasis resistance 4c (mouse) | | | | | 6 | 42093358 | 76093500 | Mouse | n/a | region | qtl |
| 1000 | 1300959 | Lxw2_m | lupus BXSB x NZW 2 (mouse) | | | Not determined | | 6 | 33872261 | 67872400 | Mouse | n/a | region | qtl |
| 1000 | 14746995 | Manh60_m | mandible shape 60 (mouse) | | | | | 6 | 37202662 | 71202662 | Mouse | n/a | region | qtl |
| 1000 | 25440480 | Moaq2_m | modifier of alien QTL 2 (mouse) | | | | | 6 | 3050001 | 117476961 | Mouse | n/a | region | qtl |
| 1000 | 11252142 | Mom12_m | Modifier of Min 12 (mouse) | | | | | 6 | 33872261 | 67872400 | Mouse | n/a | region | qtl |
| 1000 | 4141782 | Mrdq5_m | modifier of retinal degeneration QTL 5 (mouse) | | | Not determined | | | 32827585 | 78215957 | Mouse | n/a | region | qtl |
| 1000 | 11533915 | Mts4_m | mammary tumor susceptibility 4 (mouse) | | | | | 6 | 42093358 | 76093500 | Mouse | n/a | region | qtl |
| 1000 | 4141988 | Obrq3_m | obesity resistance QTL 3 (mouse) | | | Not determined | | | 28290993 | 62291115 | Mouse | n/a | region | qtl |
| 1000 | 4141454 | Obrq4_m | obesity resistance QTL 4 (mouse) | | | Not determined | | | 31703499 | 65703611 | Mouse | n/a | region | qtl |
| 1000 | 12910820 | Ogrq3_m | overall growth rate QTL 3 (mouse) | | | | | 6 | 43803747 | 77788506 | Mouse | n/a | region | qtl |
| 1000 | 1301724 | Pcd4ts1_m | p-glycoprotein positive CD4 T cell subset 1 (mouse) | | | Not determined | | 6 | 17711598 | 51711719 | Mouse | n/a | region | qtl |
| 1000 | 1300618 | Pgia19_m | proteoglycan induced arthritis 19 (mouse) | | | Not determined | | 6 | 45290993 | 87403016 | Mouse | n/a | region | qtl |
| 1000 | 12910809 | Pwbwq10_m | post-weaning body weight QTL 10 (mouse) | | | | | 6 | 43803747 | 77788506 | Mouse | n/a | region | qtl |
| 1000 | 12910807 | Pwbwq11_m | post-weaning body weight QTL 11 (mouse) | | | | | 6 | 43803747 | 77788506 | Mouse | n/a | region | qtl |
| 1000 | 12910802 | Pwbwq12_m | post-weaning body weight QTL 12 (mouse) | | | | | 6 | 43803747 | 77788506 | Mouse | n/a | region | qtl |
| 1000 | 12910785 | Pwgrq16_m | post-weaning growth rate QTL 16 (mouse) | | | | | 6 | 43803747 | 77788506 | Mouse | n/a | region | qtl |
| 1000 | 12910798 | Pwgrq5_m | pre-weaning growth rate QTL 5 (mouse) | | | | | 6 | 43803747 | 77788506 | Mouse | n/a | region | qtl |
| 1000 | 26884441 | Sklq3_m | skull length QTL 3, 5 week (mouse) | | | | | 6 | 7600000 | 80576983 | Mouse | n/a | region | qtl |
| 1000 | 4140989 | Spqq2_m | sperm quality QTL 2 (mouse) | | | Not determined | | | 17711598 | 51711719 | Mouse | n/a | region | qtl |
| 1000 | 10412213 | Sxbq2_m | SGC/Knj cross B6 QTL 2 (mouse) | | | Not determined | | 6 | 19912685 | 71299759 | Mouse | n/a | region | qtl |
| 1000 | 4142259 | Tabw2_m | tally ho associated body weight 2 (mouse) | | | Not determined | | | 46912919 | 136400690 | Mouse | n/a | region | qtl |
| 1000 | 12904943 | Tammq4_m | tibialis anterior muscle mass QTL 4 (mouse) | | | | | 6 | 19616346 | 53616346 | Mouse | n/a | region | qtl |
| 1000 | 27226726 | Tibmd7_m | tibia midshaft diameter 7, 16 week (mouse) | | | | | 6 | 17699999 | 53476985 | Mouse | n/a | region | qtl |
| 1000 | 1301326 | Trbv4c2_m | T cell receptor beta variable 4 (mouse) | | | Not determined | | 6 | 40868230 | 71356155 | Mouse | n/a | region | qtl |
| 1000 | 12880424 | V25Dq4_m | vitamin D inactive form serum level QTL 4 (mouse) | | | | | 6 | 41576985 | 75576985 | Mouse | n/a | region | qtl |
| 1000 | 12880425 | V25Dq5_m | vitamin D inactive form serum level QTL 5 (mouse) | | | | | 6 | 32676980 | 66676980 | Mouse | n/a | region | qtl |
| 1000 | 4142361 | W10q11_m | weight 10 weeks QTL 11 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | n/a | region | qtl |
| 1000 | 4142126 | W3q3_m | weight 3 weeks QTL 3 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | n/a | region | qtl |
| 1000 | 4142232 | W6q4_m | weight 6 weeks QTL 4 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | n/a | region | qtl |