| 1000 | 2317055 | Aia10 | Adjuvant induced arthritis QTL 10 | 3.41 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 15 | 75788062 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 61477 | Aia4 | Adjuvant induced arthritis QTL 4 | 3 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 15 | 55596089 | 91365858 | Rat | n/a | region | qtl |
| 1000 | 1578647 | Bmd17 | Bone mineral density QTL 17 | 4 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1578646 | Bmd18 | Bone mineral density QTL 18 | 5.2 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 631655 | Bp126 | Blood pressure QTL 126 | 4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 58156477 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 1300118 | Bp190 | Blood pressure QTL 190 | 2.94 | | arterial blood pressure trait (VT:2000000) | blood pressure measurement (CMO:0000003) | 15 | 82262520 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1331724 | Bp223 | Blood pressure QTL 223 | 3.53715 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 73690518 | 95018228 | Rat | n/a | region | qtl |
| 1000 | 70182 | BpQTLcluster12 | Blood pressure QTL cluster 12 | 3.53 | | arterial blood pressure trait (VT:2000000) | absolute change in mean arterial blood pressure (CMO:0000533) | 15 | 73690657 | 95018120 | Rat | n/a | region | qtl |
| 1000 | 1578660 | Bss19 | Bone structure and strength QTL 19 | 4.3 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1549844 | Bss7 | Bone structure and strength QTL 7 | 6.4 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 15 | 75788062 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 1582244 | Bw79 | Body weight QTL 79 | 4 | 0.0002 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 1581519 | Cm59 | Cardiac mass QTL 59 | 2.8 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 15 | 88853470 | 95840528 | Rat | n/a | region | qtl |
| 1000 | 1641889 | Colcr6 | Colorectal carcinoma resistance QTL 6 | 2.9 | 0.0126 | intestine integrity trait (VT:0010554) | benign colorectal tumor surface area measurement (CMO:0001799) | 15 | 73690518 | 99794247 | Rat | n/a | region | qtl |
| 1000 | 1581555 | Eae19 | Experimental allergic encephalomyelitis QTL 19 | 4.7 | | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 15 | 76306099 | 90088744 | Rat | n/a | region | qtl |
| 1000 | 1582228 | Epfw3 | Epididymal fat weight QTL 3 | 4.1 | 0.0002 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 70155 | Gcs1 | Gastric cancer susceptibility QTL1 | 3.8 | | stomach morphology trait (VT:0000470) | stomach tumor susceptibility score (CMO:0002043) | 15 | 76306099 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 1598828 | Glom14 | Glomerulus QTL 14 | 2.5 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 15 | 34054139 | 79054139 | Rat | n/a | region | qtl |
| 1000 | 1582242 | Gluco28 | Glucose level QTL 28 | 3.3 | 0.0008 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 1582227 | Gluco30 | Glucose level QTL 30 | 3.6 | 0.0003 | blood glucose amount (VT:0000188) | absolute change in blood glucose level area under curve (CMO:0002034) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 631516 | Gluco31 | Glucose level QTL 31 | 7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 15 | 55596089 | 95018120 | Rat | n/a | region | qtl |
| 1000 | 1300120 | Kidm7 | Kidney mass QTL 7 | 3.55 | | kidney mass (VT:0002707) | left kidney wet weight to body weight ratio (CMO:0001954) | 15 | 82262520 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 2300326 | Plaw1 | Placental weight QTL 1 | 15 | 0.005 | placenta mass (VT:0004257) | placenta wet weight (CMO:0002088) | 15 | 68327165 | 100062518 | Rat | n/a | region | qtl |
| 1000 | 1300144 | Rf23 | Renal function QTL 23 | 3.61 | | renal blood flow trait (VT:2000006) | absolute change in renal vascular resistance (CMO:0001900) | 15 | 40631268 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1576315 | Schws6 | Schwannoma susceptibility QTL 6 | | 0.0069 | nervous system integrity trait (VT:0010566) | post-insult time of death (CMO:0002005) | 15 | 53806152 | 98806152 | Rat | n/a | region | qtl |
| 1000 | 61424 | Scl1 | Serum cholesterol level QTL 1 | 7.7 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 15 | 16725528 | 80672115 | Rat | n/a | region | qtl |
| 1000 | 1358354 | Srcrt5 | Stress Responsive Cort QTL 5 | 3.38 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 15 | 98150001 | 99043291 | Rat | n/a | region | qtl |
| 1000 | 1582214 | Stl21 | Serum triglyceride level QTL 21 | 3.1 | 0.022 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 731177 | Uae26 | Urinary albumin excretion QTL 26 | 2.4 | 0.025 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 15 | 67588667 | 101769107 | Rat | n/a | region | qtl |