| 1000 | 4142399 | Aec1_m | autoimmune exocrinopathy 1 (mouse) | | | Not determined | | | 7586174 | 102690034 | Mouse | n/a | region | qtl |
| 1000 | 4141079 | Ath23_m | atherosclerosis 23 (mouse) | | | Not determined | | | 49357581 | 83357581 | Mouse | n/a | region | qtl |
| 1000 | 4141294 | Bmd24_m | bone mineral density 24 (mouse) | | | Not determined | | 3 | 61740061 | 95740241 | Mouse | n/a | region | qtl |
| 1000 | 13208566 | Bmiq5_m | body mass index QTL 5 (mouse) | | | | | 3 | 40954435 | 115793649 | Mouse | n/a | region | qtl |
| 1000 | 26884382 | Bzwq1_m | bi-zygomatic width QTL 1, 5 week (mouse) | | | | | 3 | 52207421 | 137205761 | Mouse | n/a | region | qtl |
| 1000 | 1301791 | Char4_m | P. chabaudi malaria resistance QTL 4 (mouse) | | | Not determined | | 3 | 69625509 | 100655290 | Mouse | n/a | region | qtl |
| 1000 | 1301971 | Cia5_m | collagen induced arthritis QTL 5 (mouse) | | | Not determined | | 3 | 66046658 | 100046795 | Mouse | n/a | region | qtl |
| 1000 | 26884427 | Cvht4_m | cranial vault height 4, 10 week (mouse) | | | | | 3 | 16054164 | 109707316 | Mouse | n/a | region | qtl |
| 1000 | 26884422 | Cvht7_m | cranial vault height 7, 16 week (mouse) | | | | | 3 | 28954149 | 118893649 | Mouse | n/a | region | qtl |
| 1000 | 1301392 | Eae3_m | susceptibility to experimental allergic encephalomyelitis 3 (mouse) | | | Not determined | | 3 | 79548730 | 113548837 | Mouse | n/a | region | qtl |
| 1000 | 11251721 | Ewc3_m | ethanol withdrawal and consumption 3 (mouse) | | | | | 3 | 69568554 | 103568554 | Mouse | n/a | region | qtl |
| 1000 | 1300895 | Hdl5_m | HDL level 5 (mouse) | | | Not determined | | 3 | 49495005 | 83495118 | Mouse | n/a | region | qtl |
| 1000 | 1357440 | Hrtpq1_m | heart weight percentage QTL 1 (mouse) | | | Not determined | | 3 | 10249221 | 83184946 | Mouse | n/a | region | qtl |
| 1000 | 1301904 | Iba2_m | induction of brown adipocytes 2 (mouse) | | | Not determined | | 3 | 82147043 | 116147184 | Mouse | n/a | region | qtl |
| 1000 | 4141116 | Lgaq4_m | late growth adjusted QTL 4 (mouse) | | | Not determined | | | 10249221 | 83184946 | Mouse | n/a | region | qtl |
| 1000 | 4141563 | Lgq3_m | late growth QTL 3 (mouse) | | | Not determined | | | 10249221 | 83184946 | Mouse | n/a | region | qtl |
| 1000 | 1300982 | Lmr11_m | leishmaniasis resistance 11 (mouse) | | | Not determined | | 3 | 72139967 | 106140094 | Mouse | n/a | region | qtl |
| 1000 | 11049572 | Lmr11c_m | leishmaniasis resistance 11c (mouse) | | | | | 3 | 72139967 | 106140094 | Mouse | n/a | region | qtl |
| 1000 | 11039519 | Ltpr3_m | Leishmania tropica response 3 (mouse) | | | | | 3 | 56704102 | 100464137 | Mouse | n/a | region | qtl |
| 1000 | 39128206 | Lwq18_m | liver weight QTL 18 (mouse) | | | | | 3 | 10249221 | 83184946 | Mouse | n/a | region | qtl |
| 1000 | 1357585 | Manln3_m | mandible length 3 (mouse) | | | Not determined | | 3 | 52625509 | 86625745 | Mouse | n/a | region | qtl |
| 1000 | 13464139 | Nhdlq17_m | non-HDL QTL 17 (mouse) | | | | | 3 | 52923183 | 86923183 | Mouse | n/a | region | qtl |
| 1000 | 1302056 | Orgwq4_m | organ weight QTL 4 (mouse) | | | Not determined | | 3 | 30067588 | 147304689 | Mouse | n/a | region | qtl |
| 1000 | 1301947 | Pcfm3_m | periosteal circumference and femur length 3 (mouse) | | | Not determined | | 3 | 81084652 | 115084797 | Mouse | n/a | region | qtl |
| 1000 | 1300593 | Skull4_m | skull morphology 4 (mouse) | | | Not determined | | 3 | 52625509 | 86625745 | Mouse | n/a | region | qtl |
| 1000 | 26884380 | Skwq1_m | skull length QTL 1, 5 week (mouse) | | | | | 3 | 43954435 | 101607316 | Mouse | n/a | region | qtl |
| 1000 | 26884378 | Skwq6_m | skull length QTL 6, 10 week (mouse) | | | | | 3 | 51907421 | 102307316 | Mouse | n/a | region | qtl |
| 1000 | 1301422 | Sle11_m | systematic lupus erythematosus susceptibility 11 (mouse) | | | Not determined | | 3 | 70208904 | 104209042 | Mouse | n/a | region | qtl |
| 1000 | 1301705 | Sles3_m | systemic lupus erythmatosus suppressor 3 (mouse) | | | Not determined | | 3 | 37174862 | 143353183 | Mouse | n/a | region | qtl |
| 1000 | 1357584 | Splq6_m | spleen weight QTL 6 (mouse) | | | Not determined | | 3 | 10249221 | 83184946 | Mouse | n/a | region | qtl |
| 1000 | 1301824 | Susp_m | suppressor of superoxide production (mouse) | | | Not determined | | 3 | 49495005 | 83495118 | Mouse | n/a | region | qtl |
| 1000 | 25314313 | Syncl1_m | synaptonemal complex length 1 (mouse) | | | | | 3 | 67907333 | 128393649 | Mouse | n/a | region | qtl |
| 1000 | 13207570 | Tcq12_m | total cholesterol QTL 12 (mouse) | | | | | 3 | 16504164 | 130163649 | Mouse | n/a | region | qtl |
| 1000 | 1300595 | Tmevd2_m | Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse) | | | Not determined | | 3 | 75463302 | 109463549 | Mouse | n/a | region | qtl |
| 1000 | 1301917 | Tshp4_m | tooth shape 4 (mouse) | | | Not determined | | 3 | 52625509 | 86625745 | Mouse | n/a | region | qtl |
| 1000 | 12880419 | V125Dq4_m | vitamin D active form serum level QTL 4 (mouse) | | | | | 3 | 58907307 | 92907307 | Mouse | n/a | region | qtl |
| 1000 | 4141255 | W10q3_m | weight 10 weeks QTL 3 (mouse) | | | Not determined | | | 10249221 | 83184946 | Mouse | n/a | region | qtl |
| 1000 | 26884436 | Zlq3_m | zygomatic length QTL 3, 10 week (mouse) | | | | | 3 | 3265060 | 142405761 | Mouse | n/a | region | qtl |