| 1000 | 1641894 | Alcrsp12 | Alcohol response QTL 12 | | | response to alcohol trait (VT:0010489) | brain neurotensin receptor 1 density (CMO:0002068) | 9 | 27468639 | 72468639 | Rat | n/a | region | qtl |
| 1000 | 1641911 | Alcrsp13 | Alcohol response QTL 13 | | | response to alcohol trait (VT:0010489) | brain neurotensin receptor 1 density (CMO:0002068) | 9 | 1 | 43718459 | Rat | n/a | region | qtl |
| 1000 | 12904693 | Am20 | Aortic mass QTL 20 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 18 | 11944273 | 26548295 | Rat | n/a | region | qtl |
| 1000 | 2300180 | Bmd67 | Bone mineral density QTL 67 | 4.8 | 0.0001 | femur mineral mass (VT:0010011) | bone mineral density (CMO:0001226) | 18 | 1 | 34291613 | Rat | n/a | region | qtl |
| 1000 | 7207805 | Bmd88 | Bone mineral density QTL 88 | 4 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 9 | 23754024 | 58157242 | Rat | n/a | region | qtl |
| 1000 | 7207814 | Bmd91 | Bone mineral density QTL 91 | 3.5 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 9 | 23754144 | 83851531 | Rat | n/a | region | qtl |
| 1000 | 631643 | Bp120 | Blood pressure QTL 120 | 3 | 0.004 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 22071200 | 67071200 | Rat | n/a | region | qtl |
| 1000 | 61388 | Bp2 | Blood pressure QTL 2 | 3.23 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 18 | 1 | 35374722 | Rat | n/a | region | qtl |
| 1000 | 1331753 | Bp231 | Blood pressure QTL 231 | 3.643 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 11944299 | 52293055 | Rat | n/a | region | qtl |
| 1000 | 1331741 | Bp232 | Blood pressure QTL 232 | 3.59112 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 18 | 21372893 | 83213037 | Rat | n/a | region | qtl |
| 1000 | 1331733 | Bp233 | Blood pressure QTL 233 | 3.97196 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 18 | 24796977 | 79788953 | Rat | n/a | region | qtl |
| 1000 | 1331775 | Bp235 | Blood pressure QTL 235 | 3.201 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 18 | 18234564 | 31359530 | Rat | n/a | region | qtl |
| 1000 | 1331766 | Bp236 | Blood pressure QTL 236 | 3.022 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 18 | 11944299 | 31359530 | Rat | n/a | region | qtl |
| 1000 | 2301410 | Bp317 | Blood pressure QTL 317 | | 0.004 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 18 | 11944273 | 26548295 | Rat | n/a | region | qtl |
| 1000 | 2312598 | Bp340 | Blood pressure QTL 340 | | 0.05 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 1 | 30558703 | Rat | n/a | region | qtl |
| 1000 | 6903359 | Bp355 | Blood pressure QTL 355 | 3.6 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 11944544 | 59796478 | Rat | n/a | region | qtl |
| 1000 | 11353947 | Bp392 | Blood pressure QTL 392 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 7283252 | 52283252 | Rat | n/a | region | qtl |
| 1000 | 11353949 | Bp393 | Blood pressure QTL 393 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 40194188 | 85194188 | Rat | n/a | region | qtl |
| 1000 | 61375 | Bp41 | Blood pressure QTL 41 | 2.4 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 18 | 11944299 | 41122201 | Rat | n/a | region | qtl |
| 1000 | 61382 | Bp46 | Blood pressure QTL 46 | 18.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 11941791 | 31393320 | Rat | n/a | region | qtl |
| 1000 | 1578661 | Bss20 | Bone structure and strength QTL 20 | 3.7 | | femur morphology trait (VT:0000559) | femoral neck cross-sectional area (CMO:0001697) | 18 | 11791518 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 1578667 | Bss21 | Bone structure and strength QTL 21 | 3.5 | | femur morphology trait (VT:0000559) | femoral neck cortical cross-sectional area (CMO:0001702) | 18 | 11791518 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 2293708 | Bss46 | Bone structure and strength QTL 46 | 8.8 | 0.0001 | lumbar vertebra morphology trait (VT:0010494) | lumbar vertebra cortical cross-sectional area (CMO:0001690) | 18 | 11791518 | 63636873 | Rat | n/a | region | qtl |
| 1000 | 2293661 | Bss50 | Bone structure and strength QTL 50 | 4.64 | 0.0003 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra trabecular cross-sectional area (CMO:0001692) | 18 | 1 | 34291613 | Rat | n/a | region | qtl |
| 1000 | 2313082 | Bss85 | Bone structure and strength QTL 85 | 0.8 | 0.0001 | long bone metaphysis morphology trait (VT:0000133) | tibia midshaft total cross-sectional area (CMO:0001715) | 18 | 14951337 | 59951337 | Rat | n/a | region | qtl |
| 1000 | 7411571 | Bw138 | Body weight QTL 138 | 14.3 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 9 | 32535505 | 77535505 | Rat | n/a | region | qtl |
| 1000 | 1300180 | Bw14 | Body weight QTL 14 | 3.776 | | body mass (VT:0001259) | body weight (CMO:0000012) | 9 | 23754024 | 61381613 | Rat | n/a | region | qtl |
| 1000 | 12904680 | Bw189 | Body weight QTL 189 | | 0.019 | body mass (VT:0001259) | body weight (CMO:0000012) | 18 | 11944273 | 26548295 | Rat | n/a | region | qtl |
| 1000 | 631211 | Bw4 | Body weight QTL4 | 5.31 | | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 9 | 5109826 | 50109826 | Rat | n/a | region | qtl |
| 1000 | 1331757 | Cdexp1 | CD45RC expression in CD8 T cells QTL 1 | 4.3 | | CD8-positive T cell quantity (VT:0008077) | blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990) | 9 | 1024537 | 67509080 | Rat | n/a | region | qtl |
| 1000 | 61425 | Cia15 | Collagen induced arthritis QTL 15 | 4.6 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 9 | 5109826 | 42921101 | Rat | n/a | region | qtl |
| 1000 | 631680 | Cm11 | Cardiac mass QTL 11 | 3.1 | 0.00089 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 9 | 20430519 | 65430519 | Rat | n/a | region | qtl |
| 1000 | 12904689 | Cm128 | Cardiac mass QTL 128 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 18 | 11944273 | 26548295 | Rat | n/a | region | qtl |
| 1000 | 12904690 | Cm129 | Cardiac mass QTL 129 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 18 | 11944273 | 26548295 | Rat | n/a | region | qtl |
| 1000 | 12904691 | Cm130 | Cardiac mass QTL 130 | | 0.001 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 18 | 11944273 | 26548295 | Rat | n/a | region | qtl |
| 1000 | 70218 | Cm28 | Cardiac mass QTL 28 | 8.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 25268044 | 79271759 | Rat | n/a | region | qtl |
| 1000 | 1641923 | Colcr8 | Colorectal carcinoma resistance QTL 8 | 3.1 | 0.0014 | intestine integrity trait (VT:0010554) | poorly differentiated malignant colorectal tumor number (CMO:0002076) | 18 | 22066242 | 52293055 | Rat | n/a | region | qtl |
| 1000 | 1354650 | Despr5 | Despair related QTL 5 | 4.01 | 0.0017 | locomotor behavior trait (VT:0001392) | amount of time spent in voluntary immobility (CMO:0001043) | 9 | 1254084 | 46254084 | Rat | n/a | region | qtl |
| 1000 | 1298088 | Edpm11 | Estrogen-dependent pituitary mass QTL 11 | 2.5 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 9 | 1 | 43718459 | Rat | n/a | region | qtl |
| 1000 | 1358193 | Emca2 | Estrogen-induced mammary cancer QTL 2 | 1.6 | | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 18 | 18007599 | 63571040 | Rat | n/a | region | qtl |
| 1000 | 7411609 | Foco16 | Food consumption QTL 16 | 25.6 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 8952560 | 53952560 | Rat | n/a | region | qtl |
| 1000 | 7411656 | Foco26 | Food consumption QTL 26 | 9.8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 32535505 | 77535505 | Rat | n/a | region | qtl |
| 1000 | 2312568 | Glom21 | Glomerulus QTL 21 | 2 | 0.005 | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 18 | 5185858 | 40503530 | Rat | n/a | region | qtl |
| 1000 | 2303559 | Gluco54 | Glucose level QTL 54 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 9 | 1254084 | 46254084 | Rat | n/a | region | qtl |
| 1000 | 2299160 | Iddm35 | Insulin dependent diabetes mellitus QTL 35 | 2.79 | | blood glucose amount (VT:0000188) | age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140) | 18 | 4207941 | 60377792 | Rat | n/a | region | qtl |
| 1000 | 9589133 | Insul26 | Insulin level QTL 26 | 17.96 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 9 | 8952560 | 53952560 | Rat | n/a | region | qtl |
| 1000 | 9589153 | Insul31 | Insulin level QTL 31 | 7.15 | 0.05 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 18 | 1 | 42547119 | Rat | n/a | region | qtl |
| 1000 | 12904695 | Kidm73 | Kidney mass QTL 73 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 18 | 11944273 | 26548295 | Rat | n/a | region | qtl |
| 1000 | 1600373 | Mamtr6 | Mammary tumor resistance QTL 6 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 18 | 19278901 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 1600365 | Mcs20 | Mammary carcinoma susceptibility QTL 20 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 9 | 13533770 | 42791750 | Rat | n/a | region | qtl |
| 1000 | 1598834 | Memor11 | Memory QTL 11 | 2.5 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 9 | 36962359 | 77814038 | Rat | n/a | region | qtl |
| 1000 | 1598823 | Memor16 | Memory QTL 16 | 1.9 | | exploratory behavior trait (VT:0010471) | difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678) | 9 | 22133322 | 49968732 | Rat | n/a | region | qtl |
| 1000 | 70186 | Niddm26 | Non-insulin dependent diabetes mellitus QTL 26 | 3.87 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 9 | 22071169 | 86369743 | Rat | n/a | region | qtl |
| 1000 | 8552968 | Pigfal19 | Plasma insulin-like growth factor 1 level QTL 19 | 11.4 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 18 | 1 | 25758124 | Rat | n/a | region | qtl |
| 1000 | 6903941 | Pur31 | Proteinuria QTL 31 | | 0.036 | urine total protein amount (VT:0000032) | urine protein excretion rate (CMO:0000759) | 9 | 40194188 | 85194188 | Rat | n/a | region | qtl |
| 1000 | 1331735 | Rf44 | Renal function QTL 44 | 2.981 | | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 18 | 18234564 | 31359530 | Rat | n/a | region | qtl |
| 1000 | 631264 | Scl22 | Serum cholesterol level QTL 22 | 6.2 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 18 | 11941791 | 31393320 | Rat | n/a | region | qtl |
| 1000 | 2290450 | Scl57 | Serum cholesterol level QTL 57 | 4.15 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 9 | 36962359 | 95410867 | Rat | n/a | region | qtl |
| 1000 | 9590248 | Scort10 | Serum corticosterone level QTL 10 | 19.71 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 18 | 1 | 25758124 | Rat | n/a | region | qtl |
| 1000 | 1358358 | Sradr6 | Stress Responsive Adrenal Weight QTL 6 | 2.49 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 18 | 11944299 | 59330563 | Rat | n/a | region | qtl |
| 1000 | 10054125 | Srcrt7 | Stress Responsive Cort QTL 7 | 3.33 | 0.0011 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 9 | 1 | 87073594 | Rat | n/a | region | qtl |
| 1000 | 731164 | Uae25 | Urinary albumin excretion QTL 25 | 3.5 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 25661188 | 100929786 | Rat | n/a | region | qtl |
| 1000 | 724544 | Uae9 | Urinary albumin excretion QTL 9 | 4.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 9 | 25268044 | 114175309 | Rat | n/a | region | qtl |
| 1000 | 8662828 | Vetf6 | Vascular elastic tissue fragility QTL 6 | 3.9 | | artery integrity trait (VT:0010639) | patent ductus arteriosus score (CMO:0002566) | 9 | 36962359 | 92058970 | Rat | n/a | region | qtl |