| 1000 | 8655655 | Arrd2 | Age-related retinal degeneration QTL 2 | 7.79 | | retinal layer morphology trait (VT:0003727) | percentage of study population developing retinopathy during a period of time (CMO:0002453) | 1 | 193400541 | 238400541 | Rat | n/a | region | qtl |
| 1000 | 8655855 | Arrd3 | Age-related retinal degeneration QTL 3 | 3.07 | | lens clarity trait (VT:0001304) | cataract incidence/prevalence measurement (CMO:0001585) | 1 | 193400541 | 238400541 | Rat | n/a | region | qtl |
| 1000 | 2300187 | Bmd41 | Bone mineral density QTL 41 | 8.9 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 2300174 | Bmd42 | Bone mineral density QTL 42 | 8.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | bone mineral density (CMO:0001226) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 2300161 | Bmd43 | Bone mineral density QTL 43 | 8.4 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 634312 | Bp143 | Blood pressure QTL 143 | 3 | 0.0002 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 203300512 | 229359342 | Rat | n/a | region | qtl |
| 1000 | 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 103779152 | 223964440 | Rat | n/a | region | qtl |
| 1000 | 1300168 | Bp170 | Blood pressure QTL 170 | 2.76 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 192995199 | 237995199 | Rat | n/a | region | qtl |
| 1000 | 631205 | Bp196 | Blood pressure QTL 196 | 4 | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 98879955 | 208479939 | Rat | n/a | region | qtl |
| 1000 | 61347 | Bp197 | Blood pressure QTL 197 | 4.2 | | arterial blood pressure trait (VT:2000000) | blood pressure measurement (CMO:0000003) | 1 | 168063662 | 213063662 | Rat | n/a | region | qtl |
| 1000 | 1354606 | Bp246 | Blood pressure QTL 246 | 3.6 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 111949780 | 228180370 | Rat | n/a | region | qtl |
| 1000 | 1358898 | Bp255 | Blood pressure QTL 255 | 3.6 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 200449456 | 256003563 | Rat | n/a | region | qtl |
| 1000 | 61341 | Bp26 | Blood pressure QTL 26 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 139442053 | 223964440 | Rat | n/a | region | qtl |
| 1000 | 1358886 | Bp260 | Blood pressure QTL 260 | 3.67 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 160574007 | 235238518 | Rat | n/a | region | qtl |
| 1000 | 61348 | Bp30 | Blood pressure QTL 30 | 2.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 159894717 | 207261263 | Rat | n/a | region | qtl |
| 1000 | 2292220 | Bp306 | Blood pressure QTL 306 | 3.47 | 0.00087 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 186298393 | 231298393 | Rat | n/a | region | qtl |
| 1000 | 2292222 | Bp307 | Blood pressure QTL 307 | 3.06 | 0.0014 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 186298393 | 231298393 | Rat | n/a | region | qtl |
| 1000 | 10059597 | Bp377 | Blood pressure QTL 377 | 3.42 | 0.025 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 34565911 | 208798288 | Rat | n/a | region | qtl |
| 1000 | 10059600 | Bp378 | Blood pressure QTL 378 | 3.08 | 0.05 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 186298393 | 231298393 | Rat | n/a | region | qtl |
| 1000 | 61376 | Bp42 | Blood pressure QTL 42 | 23.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 207243873 | 252243873 | Rat | n/a | region | qtl |
| 1000 | 1549830 | Bss1 | Bone structure and strength QTL 1 | 4.8 | | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 1 | 182039247 | 227039247 | Rat | n/a | region | qtl |
| 1000 | 2293693 | Bss22 | Bone structure and strength QTL 22 | 33.52 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 2293673 | Bss27 | Bone structure and strength QTL 27 | 18.63 | 0.0001 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 2293654 | Bss30 | Bone structure and strength QTL 30 | 32.65 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 2293677 | Bss41 | Bone structure and strength QTL 41 | 9.38 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 2293689 | Bss47 | Bone structure and strength QTL 47 | 7.25 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra trabecular cross-sectional area (CMO:0001692) | 1 | 181059071 | 226059071 | Rat | n/a | region | qtl |
| 1000 | 152025235 | Bw194 | Body weight QTL 194 | 4.86 | | body mass (VT:0001259) | | 1 | 132966869 | 252856240 | Rat | n/a | region | qtl |
| 1000 | 70163 | Bw20 | Body weight QTL 20 | 5.1 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 183564652 | 228564652 | Rat | n/a | region | qtl |
| 1000 | 1354661 | Bw33 | Body weight QTL 33 | 5.2 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 160573753 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1354610 | Bw34 | Body weight QTL 34 | 4.1 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 160573753 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1354602 | Bw35 | Body weight QTL 35 | 12.2 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 160573753 | 210707719 | Rat | n/a | region | qtl |
| 1000 | 1358294 | Bw37 | Body weight QTL 37 | 5 | 0.000011 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 180739993 | 225739993 | Rat | n/a | region | qtl |
| 1000 | 1357335 | Bw39 | Body weight QTL 39 | 3.3 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 207243873 | 252243873 | Rat | n/a | region | qtl |
| 1000 | 1358902 | Bw47 | Body weight QTL 47 | 1.67 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 99645382 | 221502378 | Rat | n/a | region | qtl |
| 1000 | 631214 | Bw61 | Body weight QTL61 | 3.4 | 0.0001 | intramuscular adipose amount (VT:0010044) | intramuscular fat area (CMO:0001162) | 1 | 182535316 | 227535316 | Rat | n/a | region | qtl |
| 1000 | 1354615 | Cm32 | Cardiac mass QTL 32 | 5.2 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 1 | 111949780 | 210707719 | Rat | n/a | region | qtl |
| 1000 | 1354624 | Cm35 | Cardiac mass QTL35 | 5.7 | | heart left ventricle mass (VT:0007031) | calculated heart weight (CMO:0000073) | 1 | 186658830 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1354591 | Cm36 | Cardiac mass QTL 36 | 4.1 | | heart left ventricle mass (VT:0007031) | calculated heart weight (CMO:0000073) | 1 | 111949780 | 210707719 | Rat | n/a | region | qtl |
| 1000 | 1358292 | Cm37 | Cardiac mass QTL 37 | 6.2 | 8e-07 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 1 | 205674651 | 250674651 | Rat | n/a | region | qtl |
| 1000 | 631658 | Cm7 | Cardiac mass QTL 7 | 5.32 | 0.0001 | aorta mass (VT:0002845) | aorta weight (CMO:0000076) | 1 | 205674651 | 250674651 | Rat | n/a | region | qtl |
| 1000 | 7771612 | Cm80 | Cardiac mass QTL 80 | 8.4 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight (CMO:0000776) | 1 | 146080545 | 243492863 | Rat | n/a | region | qtl |
| 1000 | 1354653 | Despr9 | Despair related QTL 9 | | 0.00019 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 1 | 177339686 | 222339686 | Rat | n/a | region | qtl |
| 1000 | 1600397 | Edcs4 | Endometrial carcinoma susceptibility QTL 4 | 2.2 | | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 1 | 176288899 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 8552891 | Epfw5 | Epididymal fat weight QTL 5 | 4.4 | | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 1 | 202543537 | 247543537 | Rat | n/a | region | qtl |
| 1000 | 2312564 | Glom18 | Glomerulus QTL 18 | 2.4 | 0.003 | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 1 | 194786607 | 262083703 | Rat | n/a | region | qtl |
| 1000 | 634321 | Hc1 | Hypercalciuria QTL 1 | 2.91 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 1 | 188241285 | 250779312 | Rat | n/a | region | qtl |
| 1000 | 1549837 | Hcar15 | Hepatocarcinoma resistance QTL 15 | | 0.05 | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 162548015 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 634338 | Hcar4 | Hepatocarcinoma resistance QTL 4 | 4.6 | | liver integrity trait (VT:0010547) | liver tumorous lesion number to liver area ratio (CMO:0001210) | 1 | 202851915 | 223964440 | Rat | n/a | region | qtl |
| 1000 | 737828 | Hcas3 | Hepatocarcinoma susceptibility QTL 3 | 4.9 | | liver integrity trait (VT:0010547) | liver tumorous lesion volume to total liver volume ratio (CMO:0001082) | 1 | 153679879 | 232414077 | Rat | n/a | region | qtl |
| 1000 | 738032 | Hcas5 | Hepatocarcinoma susceptibility QTL 5 | 3.12 | | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 185857683 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 1359018 | Hrtrt20 | Heart rate QTL 20 | 3.08 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 1 | 194786607 | 207590403 | Rat | n/a | region | qtl |
| 1000 | 2293083 | Iddm25 | Insulin dependent diabetes mellitus QTL 25 | 4.18 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 191260175 | 236260175 | Rat | n/a | region | qtl |
| 1000 | 6480777 | Insul17 | Insulin level QTL 17 | 3.86 | | blood insulin amount (VT:0001560) | blood insulin level area under curve (AUC) (CMO:0000351) | 1 | 206690418 | 207509562 | Rat | n/a | region | qtl |
| 1000 | 6480783 | Insul19 | Insulin level QTL 19 | 4.33 | | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 1 | 203300512 | 213659238 | Rat | n/a | region | qtl |
| 1000 | 1354634 | Kidm12 | Kidney mass QTL 12 | 3.9 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 1 | 160573753 | 210707719 | Rat | n/a | region | qtl |
| 1000 | 1354618 | Kidm15 | Kidney mass QTL 15 | 5 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 1 | 165707719 | 210707719 | Rat | n/a | region | qtl |
| 1000 | 1354646 | Kidm18 | Kidney mass QTL 18 | 5.7 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 160573753 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1354620 | Kidm19 | Kidney mass QTL 19 | 4 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 160573753 | 210707719 | Rat | n/a | region | qtl |
| 1000 | 1354652 | Kidm20 | Kidney mass QTL 20 | 4.3 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 186658830 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1582206 | Kidm33 | Kidney mass QTL 33 | 6.9 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 1 | 197807365 | 233480676 | Rat | n/a | region | qtl |
| 1000 | 1354636 | Lmblg1 | Limb length QTL 1 | 6.4 | | tibia length (VT:0004357) | tibia length (CMO:0000450) | 1 | 160573753 | 210707719 | Rat | n/a | region | qtl |
| 1000 | 1600374 | Mcs17 | Mammary carcinoma susceptibility QTL 17 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 1 | 207099883 | 252099883 | Rat | n/a | region | qtl |
| 1000 | 1598853 | Memor3 | Memory QTL 3 | 4.5 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 1 | 152919152 | 268496042 | Rat | n/a | region | qtl |
| 1000 | 70209 | Niddm23 | Non-insulin dependent diabetes mellitus QTL 23 | 2.82 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 162753891 | 207753891 | Rat | n/a | region | qtl |
| 1000 | 631838 | Niddm36 | Non-insulin dependent diabetes mellitus QTL 36 | | 0.01 | insulin secretion trait (VT:0003564) | calculated pancreatic islet insulin release measurement (CMO:0001217) | 1 | 193964073 | 238964073 | Rat | n/a | region | qtl |
| 1000 | 61403 | Niddm4 | Non-insulin dependent diabetes mellitus QTL 4 | | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 1 | 201464383 | 246464383 | Rat | n/a | region | qtl |
| 1000 | 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 51941022 | 208479811 | Rat | n/a | region | qtl |
| 1000 | 1600388 | Niddm67 | Non-insulin dependent diabetes mellitus QTL 67 | 5.84 | 0.000004 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 205233991 | 267096252 | Rat | n/a | region | qtl |
| 1000 | 1600396 | Niddm68 | Non-insulin dependent diabetes mellitus QTL 68 | 4.97 | 0.0003 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 205233991 | 267096252 | Rat | n/a | region | qtl |
| 1000 | 1600395 | Niddm69 | Non-insulin dependent diabetes mellitus QTL 69 | 4.14 | 0.0002 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 1 | 205233991 | 267096252 | Rat | n/a | region | qtl |
| 1000 | 1600380 | Niddm70 | Non-insulin dependent diabetes mellitus QTL 70 | 3.1 | 0.0008 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 1 | 185979875 | 230979875 | Rat | n/a | region | qtl |
| 1000 | 724559 | Pancm1 | Pancreatic morphology QTL 1 | 7.1 | | islet of Langerhans morphology trait (VT:0005215) | pancreatic islet damage composite score (CMO:0001156) | 1 | 191190115 | 223964326 | Rat | n/a | region | qtl |
| 1000 | 2325727 | Pia41 | Pristane induced arthritis QTL 41 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 1 | 188241285 | 233241285 | Rat | n/a | region | qtl |
| 1000 | 2312420 | Pur17 | Proteinuria QTL 17 | 7.1 | 0.0001 | urine protein amount (VT:0005160) | urine total protein excretion rate (CMO:0000756) | 1 | 172718770 | 228180370 | Rat | n/a | region | qtl |
| 1000 | 1578778 | Pur4 | Proteinuria QTL 4 | 3.3 | 0.003 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 1 | 160111531 | 262090437 | Rat | n/a | region | qtl |
| 1000 | 724562 | Rends1 | Renal damage susceptibility QTL 1 | | 0.05 | kidney glomerulus integrity trait (VT:0010546) | index of glomerular damage (CMO:0001135) | 1 | 139442053 | 223964440 | Rat | n/a | region | qtl |
| 1000 | 1300145 | Rf7 | Renal function QTL 7 | 2.96 | | urine creatinine amount (VT:0010540) | urine creatinine level (CMO:0000125) | 1 | 194575422 | 239575422 | Rat | n/a | region | qtl |
| 1000 | 6903303 | Scl34 | Serum cholesterol QTL 34 | 2.5 | 0.0033 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 1 | 173363824 | 227535316 | Rat | n/a | region | qtl |
| 1000 | 1354580 | Scort1 | Serum corticosterone level QTL 1 | 3.4 | | blood corticosterone amount (VT:0005345) | blood corticosterone level (CMO:0001172) | 1 | 154961463 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 4889428 | Stresp24 | Stress response QTL 24 | | 0.05 | heart pumping trait (VT:2000009) | absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162) | 1 | 165278545 | 210278545 | Rat | n/a | region | qtl |
| 1000 | 631260 | Tcas2 | Tongue tumor susceptibility QTL 2 | 4.93 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 1 | 201915593 | 208479939 | Rat | n/a | region | qtl |
| 1000 | 1641926 | Teswt2 | Testicular weight QTL 2 | 2.82 | | testis mass (VT:1000644) | both testes wet weight (CMO:0000175) | 1 | 203675682 | 248675682 | Rat | n/a | region | qtl |
| 1000 | 1298084 | Thym4 | Thymus enlargement QTL 4 | 10.68 | | thymus mass (VT:0004954) | thymus weight to body weight ratio (CMO:0000612) | 1 | 207243873 | 252243873 | Rat | n/a | region | qtl |
| 1000 | 731175 | Uae20 | Urinary albumin excretion QTL 20 | 3.5 | 0.0018 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 207163993 | 269633915 | Rat | n/a | region | qtl |
| 1000 | 1578759 | Uae30 | Urinary albumin excretion QTL 30 | 3.3 | 0.003 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 160111531 | 262090437 | Rat | n/a | region | qtl |
| 1000 | 724531 | Uae5 | Urinary albumin excretion QTL 5 | 4 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 1 | 160111426 | 262090599 | Rat | n/a | region | qtl |
| 1000 | 2303622 | Vencon6 | Ventilatory control QTL 6 | | 0.001 | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 1 | 163992710 | 208992710 | Rat | n/a | region | qtl |