| 1000 | 631828 | Alc5 | Alcohol consumption QTL 5 | 2.4 | | consumption behavior trait (VT:0002069) | ethanol drink intake rate (CMO:0001407) | 10 | 5217199 | 17555534 | Rat | n/a | region | qtl |
| 1000 | 737820 | Alc9 | Alcohol consumption QTL 9 | 2.2 | | consumption behavior trait (VT:0002069) | ethanol drink intake rate (CMO:0001407) | 10 | 5217199 | 19591669 | Rat | n/a | region | qtl |
| 1000 | 2313064 | Bmd71 | Bone mineral density QTL 71 | 0.9 | 0.0001 | tibia mineral mass (VT:1000283) | cortical volumetric bone mineral density (CMO:0001730) | 10 | 5460119 | 21524070 | Rat | n/a | region | qtl |
| 1000 | 631554 | Bp133 | Blood pressure QTL 133 | | 0.005 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 764421 | 66221621 | Rat | n/a | region | qtl |
| 1000 | 2293680 | Bss40 | Bone structure and strength QTL 40 | 5.66 | 0.0001 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 10 | 1 | 35538813 | Rat | n/a | region | qtl |
| 1000 | 2313104 | Bss61 | Bone structure and strength QTL 61 | 0.9 | 0.0001 | tibia area (VT:1000281) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 5460119 | 21524070 | Rat | n/a | region | qtl |
| 1000 | 2313095 | Bss62 | Bone structure and strength QTL 62 | 1.5 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 5460119 | 21524070 | Rat | n/a | region | qtl |
| 1000 | 2313066 | Bss63 | Bone structure and strength QTL 63 | 1.4 | 0.0001 | tibia strength trait (VT:1000284) | bone polar moment of inertia (CMO:0001558) | 10 | 5460119 | 21524070 | Rat | n/a | region | qtl |
| 1000 | 2313081 | Bss64 | Bone structure and strength QTL 64 | 1.3 | 0.0001 | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 10 | 5460119 | 21524070 | Rat | n/a | region | qtl |
| 1000 | 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6429075 | 99492409 | Rat | n/a | region | qtl |
| 1000 | 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14827894 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14827894 | 92423564 | Rat | n/a | region | qtl |
| 1000 | 7411611 | Foco17 | Food consumption QTL 17 | 18.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 1 | 42669970 | Rat | n/a | region | qtl |
| 1000 | 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14827894 | 110992275 | Rat | n/a | region | qtl |
| 1000 | 634327 | Hc4 | Hypercalciuria QTL 4 | 2.4 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 10 | 1 | 38594330 | Rat | n/a | region | qtl |
| 1000 | 631660 | Hcar1 | Hepatocarcinoma resistance QTL 1 | 3.4 | 0.0001 | liver integrity trait (VT:0010547) | volume of individual liver tumorous lesion (CMO:0001078) | 10 | 6229289 | 36185929 | Rat | n/a | region | qtl |
| 1000 | 9589136 | Insul27 | Insulin level QTL 27 | 10.46 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 10 | 12639513 | 57639513 | Rat | n/a | region | qtl |
| 1000 | 10401803 | Kidm50 | Kidney mass QTL 50 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 10 | 1 | 44902893 | Rat | n/a | region | qtl |
| 1000 | 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9841807 | 108540162 | Rat | n/a | region | qtl |
| 1000 | 2298544 | Neuinf9 | Neuroinflammation QTL 9 | 4.6 | | nervous system integrity trait (VT:0010566) | spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) | 10 | 5877536 | 64401490 | Rat | n/a | region | qtl |
| 1000 | 1576304 | Schws7 | Schwannoma susceptibility QTL 7 | | 0.0115 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 10 | 4835638 | 20170031 | Rat | n/a | region | qtl |
| 1000 | 9590268 | Scort13 | Serum corticosterone level QTL 13 | 3.26 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 12639513 | 57639513 | Rat | n/a | region | qtl |
| 1000 | 9590310 | Scort19 | Serum corticosterone level QTL 19 | 6.3 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 12639513 | 57639513 | Rat | n/a | region | qtl |
| 1000 | 1578761 | Stresp21 | Stress response QTL 21 | 3.3 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 10 | 7521450 | 52521450 | Rat | n/a | region | qtl |
| 1000 | 7387235 | Uae41 | Urinary albumin excretion QTL 41 | 5.26 | 0.1874 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 10 | 1 | 29592136 | Rat | n/a | region | qtl |
| 1000 | 8662860 | Vetf10 | Vascular elastic tissue fragility QTL 10 | | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 10 | 6229095 | 75983805 | Rat | n/a | region | qtl |