| 1000 | 2317059 | Aia15 | Adjuvant induced arthritis QTL 15 | 2.46 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 7 | 17004598 | 62004598 | Rat | n/a | region | qtl |
| 1000 | 2317035 | Aia16 | Adjuvant induced arthritis QTL 16 | 2.71 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 7 | 59238038 | 104238038 | Rat | n/a | region | qtl |
| 1000 | 2317052 | Aia17 | Adjuvant induced arthritis QTL 17 | 2.13 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 7 | 81737938 | 126737938 | Rat | n/a | region | qtl |
| 1000 | 1641885 | Alcrsp9 | Alcohol response QTL 9 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 7 | 24099606 | 69099606 | Rat | n/a | region | qtl |
| 1000 | 634336 | Anxrr17 | Anxiety related response QTL 17 | 3.66 | | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 924703 | 115097879 | Rat | n/a | region | qtl |
| 1000 | 738033 | Anxrr6 | Anxiety related response QTL 6 | 4.1 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 7 | 15573889 | 60573889 | Rat | n/a | region | qtl |
| 1000 | 738030 | Anxrr8 | Anxiety related response QTL 8 | 4.1 | | exploratory behavior trait (VT:0010471) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 46590070 | 91590070 | Rat | n/a | region | qtl |
| 1000 | 1578652 | Bmd15 | Bone mineral density QTL 15 | 5.2 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 7 | 9866467 | 60460686 | Rat | n/a | region | qtl |
| 1000 | 2293685 | Bmd21 | Bone mineral density QTL 21 | 4.2 | 0.0003 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293644 | Bmd29 | Bone mineral density QTL 29 | 5.4 | 0.0001 | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293696 | Bmd32 | Bone mineral density QTL 32 | 5.1 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2300178 | Bmd54 | Bone mineral density QTL 54 | 5.3 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 1298528 | Bp169 | Blood pressure QTL 169 | | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 61074194 | 106074194 | Rat | n/a | region | qtl |
| 1000 | 1300151 | Bp181 | Blood pressure QTL 181 | 3.36 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 7 | 53612714 | 103945643 | Rat | n/a | region | qtl |
| 1000 | 1300132 | Bp182 | Blood pressure QTL 182 | 3.49 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 7 | 19654317 | 84928080 | Rat | n/a | region | qtl |
| 1000 | 1331728 | Bp214 | Blood pressure QTL 214 | 2.825 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 80221299 | 124373579 | Rat | n/a | region | qtl |
| 1000 | 1358891 | Bp265 | Blood pressure QTL 265 | 2.21 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 83591953 | 134666232 | Rat | n/a | region | qtl |
| 1000 | 1358914 | Bp266 | Blood pressure QTL 266 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 83591953 | 134666232 | Rat | n/a | region | qtl |
| 1000 | 10402855 | Bp379 | Blood pressure QTL 379 | | 0.21 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 29409683 | 74409683 | Rat | n/a | region | qtl |
| 1000 | 61357 | Bp38 | Blood pressure QTL 38 | 1.6 | 0.052 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 41333674 | 119109060 | Rat | n/a | region | qtl |
| 1000 | 2293678 | Bss24 | Bone structure and strength QTL 24 | 6.71 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293707 | Bss32 | Bone structure and strength QTL 32 | 7.64 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293667 | Bss42 | Bone structure and strength QTL 42 | 7.25 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 1549840 | Bss5 | Bone structure and strength QTL 5 | 9.8 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 7 | 24751841 | 69751841 | Rat | n/a | region | qtl |
| 1000 | 634322 | Bw12 | Body weight QTL 12 | 0 | | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 83153392 | 128153392 | Rat | n/a | region | qtl |
| 1000 | 7411569 | Bw137 | Body weight QTL 137 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 7 | 21921195 | 66921195 | Rat | n/a | region | qtl |
| 1000 | 631540 | Bw9 | Body weight QTL 9 | 4.5 | | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 69736226 | 117455174 | Rat | n/a | region | qtl |
| 1000 | 61435 | Cia4 | Collagen induced arthritis QTL 4 | 5.3 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 7 | 58113224 | 62004598 | Rat | n/a | region | qtl |
| 1000 | 631504 | Cm27 | Cardiac mass QTL 27 | 3.45 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 7 | 44421311 | 118198041 | Rat | n/a | region | qtl |
| 1000 | 1300149 | Cm6 | Cardiac mass QTL 6 | 4.09 | | heart mass (VT:0007028) | heart left ventricle weight to body weight ratio (CMO:0000530) | 7 | 43747099 | 102228765 | Rat | n/a | region | qtl |
| 1000 | 10755440 | Coatc10 | Coat color QTL 10 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 7496499 | 52496499 | Rat | n/a | region | qtl |
| 1000 | 10755451 | Coatc11 | Coat color QTL 11 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 17944357 | 62944357 | Rat | n/a | region | qtl |
| 1000 | 10755453 | Coatc12 | Coat color QTL 12 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 31112832 | 76112832 | Rat | n/a | region | qtl |
| 1000 | 10755438 | Coatc9 | Coat color QTL 9 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 3529280 | 48529280 | Rat | n/a | region | qtl |
| 1000 | 2298475 | Eau6 | Experimental allergic uveoretinitis QTL 6 | | 0.0029 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 7 | 84257275 | 129257275 | Rat | n/a | region | qtl |
| 1000 | 1559283 | Emca4 | Estrogen-induced mammary cancer QTL 4 | 3.7 | | mammary gland integrity trait (VT:0010552) | percentage of study population developing mammary tumors during a period of time (CMO:0000948) | 7 | 62004452 | 101773158 | Rat | n/a | region | qtl |
| 1000 | 1576303 | Ept7 | Estrogen-induced pituitary tumorigenesis QTL 7 | 3.7 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 7 | 62004452 | 101773158 | Rat | n/a | region | qtl |
| 1000 | 7411605 | Foco14 | Food consumption QTL 14 | 24.1 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 7 | 34293282 | 79293282 | Rat | n/a | region | qtl |
| 1000 | 7411607 | Foco15 | Food consumption QTL 15 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 7 | 75918751 | 120918751 | Rat | n/a | region | qtl |
| 1000 | 7411654 | Foco25 | Food consumption QTL 25 | 9.3 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 7 | 75918751 | 120918751 | Rat | n/a | region | qtl |
| 1000 | 634326 | Hc3 | Hypercalciuria QTL 3 | 2.1 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 7 | 42787314 | 87787314 | Rat | n/a | region | qtl |
| 1000 | 631687 | Hcas1 | Hepatocarcinoma susceptibility QTL 1 | 3.9 | 0.001 | liver integrity trait (VT:0010547) | liver tumorous lesion volume to total liver volume ratio (CMO:0001082) | 7 | 91412594 | 129807172 | Rat | n/a | region | qtl |
| 1000 | 1300138 | Hrtrt9 | Heart rate QTL 9 | 4.72 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 7 | 29409683 | 53612950 | Rat | n/a | region | qtl |
| 1000 | 2299163 | Iddm34 | Insulin dependent diabetes mellitus QTL 34 | 2.71 | | blood glucose amount (VT:0000188) | age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140) | 7 | 91281130 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 1331768 | Kidm10 | Kidney mass QTL 10 | 4.62096 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 7 | 80221299 | 125221299 | Rat | n/a | region | qtl |
| 1000 | 10059592 | Kidm45 | Kidney mass QTL 45 | 3.95 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 7 | 7573985 | 52573985 | Rat | n/a | region | qtl |
| 1000 | 10059605 | Kidm47 | Kidney mass QTL 47 | 2.91 | 0.05 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 7 | 47251783 | 65728867 | Rat | n/a | region | qtl |
| 1000 | 1300179 | Kidm5 | Kidney mass QTL 5 | 3.51 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 7 | 43747012 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 10450862 | Kidm55 | Kidney mass QTL 55 | 4.9 | | kidney mass (VT:0002707) | kidney weight (CMO:0000081) | 7 | 70840118 | 72474897 | Rat | n/a | region | qtl |
| 1000 | 1331746 | Kidm9 | Kidney mass QTL 9 | 3.934 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 7 | 80221299 | 112308525 | Rat | n/a | region | qtl |
| 1000 | 10450856 | Livw4 | Liver weight QTL 4 | 3.8 | | liver mass (VT:0003402) | liver weight (CMO:0000092) | 7 | 70840118 | 72474897 | Rat | n/a | region | qtl |
| 1000 | 631534 | Lnnr1 | Liver neoplastic nodule remodeling QTL 1 | 3.85 | 0.001 | liver integrity trait (VT:0010547) | liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705) | 7 | 34293282 | 79293282 | Rat | n/a | region | qtl |
| 1000 | 70190 | Mcs6 | Mammary carcinoma susceptibility QTL 6 | 2.29 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 7 | 26737401 | 63902784 | Rat | n/a | region | qtl |
| 1000 | 2298547 | Neuinf5 | Neuroinflammation QTL 5 | 3.7 | | nervous system integrity trait (VT:0010566) | spinal cord Cd74 protein level (CMO:0002131) | 7 | 9462246 | 58265113 | Rat | n/a | region | qtl |
| 1000 | 71114 | Niddm14 | Non-insulin dependent diabetes mellitus QTL 14 | 4.5 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 7 | 84257275 | 129257275 | Rat | n/a | region | qtl |
| 1000 | 70173 | Niddm19 | Non-insulin dependent diabetes mellitus QTL 19 | 4.33 | 0.00005 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 7 | 64002457 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 724537 | Niddm52 | Non-insulin dependent diabetes mellitus QTL 52 | | 0.02 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 7 | 80221299 | 93595843 | Rat | n/a | region | qtl |
| 1000 | 1643004 | Pain2 | Pain QTL 2 | 1 | | mechanical nociception trait (VT:0002734) | self mutilation severity score (CMO:0002145) | 7 | 9462246 | 98011544 | Rat | n/a | region | qtl |
| 1000 | 634331 | Pia17 | Pristane induced arthritis QTL 17 | 4.7 | | joint integrity trait (VT:0010548) | arthritic paw count (CMO:0001460) | 7 | 73829340 | 130221005 | Rat | n/a | region | qtl |
| 1000 | 2316952 | Pur22 | Proteinuria QTL 22 | 5.2 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 7 | 68938720 | 113886318 | Rat | n/a | region | qtl |
| 1000 | 2316947 | Rf58 | Renal function QTL 58 | 7.8 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 7 | 68938720 | 113886318 | Rat | n/a | region | qtl |
| 1000 | 61428 | Scl3 | Serum cholesterol level QTL 3 | 3.2 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 7 | 44867533 | 89867533 | Rat | n/a | region | qtl |
| 1000 | 1354637 | Scl30 | Serum cholesterol level QTL 30 | 3.7 | | blood cholesterol amount (VT:0000180) | blood total cholesterol level (CMO:0000051) | 7 | 19654317 | 49753746 | Rat | n/a | region | qtl |
| 1000 | 631513 | Scl7 | Serum cholesterol level QTL 7 | 4.1 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 7 | 37960569 | 82960569 | Rat | n/a | region | qtl |
| 1000 | 10450828 | Scl79 | Serum cholesterol level QTL 79 | 3.5 | 0.001 | blood HDL cholesterol amount (VT:0000184) | blood low density lipoprotein cholesterol level (CMO:0000053) | 7 | 89867376 | 101773158 | Rat | n/a | region | qtl |
| 1000 | 10053722 | Scort27 | Serum corticosterone level QTL 27 | 2.41 | 0.0083 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 7 | 43228750 | 88228750 | Rat | n/a | region | qtl |
| 1000 | 9590102 | Sffal5 | Serum free fatty acids level QTL 5 | 8.62 | 0.001 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 7 | 5329019 | 50329019 | Rat | n/a | region | qtl |
| 1000 | 1354644 | Spl4 | Serum phospholipid level QTL 4 | 4.9 | | blood phospholipid amount (VT:0006084) | blood phospholipid level (CMO:0001169) | 7 | 19654317 | 49753746 | Rat | n/a | region | qtl |
| 1000 | 1354639 | Spl5 | Serum phospholipid level QTL 5 | 3.9 | | blood LDL phospholipid amount (VT:0010505) | blood low density lipoprotein phospholipid level (CMO:0001568) | 7 | 19654317 | 52888450 | Rat | n/a | region | qtl |
| 1000 | 1358361 | Sradr5 | Stress Responsive Adrenal Weight QTL 5 | 5.55 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 7 | 43747012 | 108555253 | Rat | n/a | region | qtl |
| 1000 | 1300127 | Srn1 | Serum renin concentration QTL 1 | 3.87 | | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 7 | 29409683 | 84928080 | Rat | n/a | region | qtl |
| 1000 | 1357338 | Stl17 | Serum triglyceride level QTL 17 | 3.23 | | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 7 | 69736356 | 112729554 | Rat | n/a | region | qtl |
| 1000 | 2316955 | Stl24 | Serum triglyceride level QTL 24 | 7.1 | | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 7 | 68938720 | 113886318 | Rat | n/a | region | qtl |
| 1000 | 1549899 | Stresp8 | Stress response QTL 8 | 4.37 | 0.0008 | stress-related behavior trait (VT:0010451) | defensive burying duration (CMO:0001961) | 7 | 90482196 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 1558655 | Swd4 | Spike wave discharge measurement QTL 4 | 3.68 | 0.0002 | brain electrophysiology trait (VT:0010557) | brain spike-and-wave discharge severity grade (CMO:0001988) | 7 | 86983365 | 131983365 | Rat | n/a | region | qtl |
| 1000 | 1641908 | Teswt1 | Testicular weight QTL 1 | 3.28 | | testis mass (VT:1000644) | both testes wet weight (CMO:0000175) | 7 | 80221299 | 94811326 | Rat | n/a | region | qtl |
| 1000 | 631529 | Tls2 | T-lymphoma susceptibility QTL 2 | 0 | 0.001 | thymus integrity trait (VT:0010555) | percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911) | 7 | 80221299 | 109401111 | Rat | n/a | region | qtl |
| 1000 | 2303629 | Vencon3 | Ventilatory control QTL 3 | 7.25 | | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 7 | 41109692 | 56793354 | Rat | n/a | region | qtl |