| 1000 | 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 69385595 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 2317042 | Aia20 | Adjuvant induced arthritis QTL 20 | 3.38 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 40514044 | 85514044 | Rat | n/a | region | qtl |
| 1000 | 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 24483076 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 69385595 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 2317043 | Aia7 | Adjuvant induced arthritis QTL 7 | 3.82 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 40514044 | 85514044 | Rat | n/a | region | qtl |
| 1000 | 12880372 | Am12 | Aortic mass QTL 12 | | 0.003 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 10 | 68697928 | 70581793 | Rat | n/a | region | qtl |
| 1000 | 12903269 | Am15 | Aortic mass QTL 15 | | 0.042 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 10 | 68697928 | 70167191 | Rat | n/a | region | qtl |
| 1000 | 2306970 | Anxrr22 | Anxiety related response QTL 22 | 5.95 | | fear/anxiety-related behavior trait (VT:1000241) | number of periods of voluntary immobility (CMO:0001045) | 10 | 64648175 | 101691360 | Rat | n/a | region | qtl |
| 1000 | 2293652 | Bmd22 | Bone mineral density QTL 22 | 4.9 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 51289203 | 84596393 | Rat | n/a | region | qtl |
| 1000 | 2293705 | Bmd25 | Bone mineral density QTL 25 | 7.1 | 0.0001 | femur mineral mass (VT:0010011) | cortical volumetric bone mineral density (CMO:0001730) | 10 | 51289203 | 84596393 | Rat | n/a | region | qtl |
| 1000 | 2293679 | Bmd30 | Bone mineral density QTL 30 | 3.5 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 51289203 | 84596393 | Rat | n/a | region | qtl |
| 1000 | 2293669 | Bmd33 | Bone mineral density QTL 33 | 4.5 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 10 | 51289203 | 84596393 | Rat | n/a | region | qtl |
| 1000 | 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 20170031 | 102897474 | Rat | n/a | region | qtl |
| 1000 | 2300171 | Bmd58 | Bone mineral density QTL 58 | 4.9 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 28789280 | 73789280 | Rat | n/a | region | qtl |
| 1000 | 7207811 | Bmd90 | Bone mineral density QTL 90 | 5.2 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 10 | 51289203 | 84596393 | Rat | n/a | region | qtl |
| 1000 | 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 53621375 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 53621375 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 61463 | Bp12 | Blood pressure QTL 12 | 6.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 43704955 | 88704955 | Rat | n/a | region | qtl |
| 1000 | 631557 | Bp136 | Blood pressure QTL 136 | | 0.003 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 33343192 | 78343192 | Rat | n/a | region | qtl |
| 1000 | 724527 | Bp148 | Blood pressure QTL 148 | | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 30983805 | 75983805 | Rat | n/a | region | qtl |
| 1000 | 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 27237530 | 101482600 | Rat | n/a | region | qtl |
| 1000 | 1357344 | Bp249 | Blood pressure QTL 249 | | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 69123603 | 101482600 | Rat | n/a | region | qtl |
| 1000 | 1579917 | Bp282 | Blood pressure QTL 282 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 69808793 | 70581793 | Rat | n/a | region | qtl |
| 1000 | 2289985 | Bp305 | Blood pressure QTL 305 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 69910832 | 76109716 | Rat | n/a | region | qtl |
| 1000 | 2292441 | Bp308 | Blood pressure QTL 308 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 30099909 | 75099909 | Rat | n/a | region | qtl |
| 1000 | 2292440 | Bp312 | Blood pressure QTL 312 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 70166960 | 70581793 | Rat | n/a | region | qtl |
| 1000 | 8657410 | Bp374 | Blood pressure QTL 374 | | | heart left ventricle size trait (VT:0002753) | heart left ventricular end-diastolic diameter (CMO:0000982) | 10 | 69385595 | 70167191 | Rat | n/a | region | qtl |
| 1000 | 10402859 | Bp381 | Blood pressure QTL 381 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 30099909 | 75099909 | Rat | n/a | region | qtl |
| 1000 | 10450498 | Bp384 | Blood pressure QTL 384 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 70166960 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 70223 | Bp57 | Blood pressure QTL 57 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 21523906 | 83549467 | Rat | n/a | region | qtl |
| 1000 | 70363 | Bp71 | Blood pressure QTL 71 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 64648175 | 84601269 | Rat | n/a | region | qtl |
| 1000 | 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 27237530 | 102427718 | Rat | n/a | region | qtl |
| 1000 | 631547 | Bp87 | Blood pressure QTL 87 | 4.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 50638337 | 95638337 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70198 | BpQTLcluster9 | Blood pressure QTL cluster 9 | 2.94 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 10 | 62096293 | 107096293 | Rat | n/a | region | qtl |
| 1000 | 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | | lumbar vertebra strength trait (VT:0010574) | vertebra ultimate force (CMO:0001678) | 10 | 60450007 | 105450007 | Rat | n/a | region | qtl |
| 1000 | 2313105 | Bss79 | Bone structure and strength QTL 79 | 1.8 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 65992275 | 110992275 | Rat | n/a | region | qtl |
| 1000 | 2313103 | Bss80 | Bone structure and strength QTL 80 | 2 | 0.0001 | tibia strength trait (VT:1000284) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 10 | 65992275 | 110992275 | Rat | n/a | region | qtl |
| 1000 | 7387312 | Bw125 | Body weight QTL 125 | 3 | 0.0047 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight (CMO:0000356) | 10 | 67880046 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 8552805 | Bw145 | Body weight QTL 145 | 2.2 | | body mass (VT:0001259) | change in body weight to body weight ratio (CMO:0002216) | 10 | 43188659 | 81042642 | Rat | n/a | region | qtl |
| 1000 | 8694173 | Bw149 | Body weight QTL 149 | 4.38 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 10 | 46848346 | 91848346 | Rat | n/a | region | qtl |
| 1000 | 70164 | Bw21 | Body weight QTL 21 | 4.36 | 0.00005 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 55679084 | 102427604 | Rat | n/a | region | qtl |
| 1000 | 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | 0.0005 | hypodermis integrity trait (VT:0010550) | inflammatory exudate volume (CMO:0001429) | 10 | 55678976 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6429075 | 99492409 | Rat | n/a | region | qtl |
| 1000 | 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 24483076 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14827894 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 41260363 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 41260363 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 1576319 | Cia29 | Collagen induced arthritis QTL 29 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 35139424 | 80139424 | Rat | n/a | region | qtl |
| 1000 | 61449 | Ciaa2 | CIA Autoantibody QTL 2 | 7.1 | | blood autoantibody amount (VT:0003725) | calculated serum anti-type 2 collagen antibody titer (CMO:0001279) | 10 | 65590122 | 110590122 | Rat | n/a | region | qtl |
| 1000 | 12880370 | Cm105 | Cardiac mass QTL 105 | | 0.008 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 10 | 68697928 | 70581793 | Rat | n/a | region | qtl |
| 1000 | 12880371 | Cm106 | Cardiac mass QTL 106 | | 0.007 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 68697928 | 70581793 | Rat | n/a | region | qtl |
| 1000 | 12903252 | Cm113 | Cardiac mass QTL 113 | | 0.047 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 68697928 | 70167191 | Rat | n/a | region | qtl |
| 1000 | 12903266 | Cm114 | Cardiac mass QTL 114 | | 0.02 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 10 | 68697928 | 70167191 | Rat | n/a | region | qtl |
| 1000 | 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 23861015 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 10 | 56698730 | 101698730 | Rat | n/a | region | qtl |
| 1000 | 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | 0.0000368 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 64648175 | 102149713 | Rat | n/a | region | qtl |
| 1000 | 631535 | Cm51 | Cardiac mass QTL 51 | 3 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 53637485 | 94807701 | Rat | n/a | region | qtl |
| 1000 | 2301405 | Cm69 | Cardiac mass QTL 69 | | 0.031 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 10 | 68697928 | 70167191 | Rat | n/a | region | qtl |
| 1000 | 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14827894 | 92423564 | Rat | n/a | region | qtl |
| 1000 | 6893336 | Cm75 | Cardiac mass QTL 75 | 0.1 | 0.87 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 64648175 | 102149713 | Rat | n/a | region | qtl |
| 1000 | 6893342 | Cm78 | Cardiac mass QTL 78 | 0.1 | 0.88 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 36185929 | 82675365 | Rat | n/a | region | qtl |
| 1000 | 1581559 | Eae18 | Experimental allergic encephalomyelitis QTL 18 | | 0.00002 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 10 | 67988218 | 110992091 | Rat | n/a | region | qtl |
| 1000 | 1331839 | Eae18b | Experimental allergic encephalomyelitis QTL 18b | 5.8 | 0.03 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 10 | 64550912 | 70202084 | Rat | n/a | region | qtl |
| 1000 | 2298481 | Eau9 | Experimental allergic uveoretinitis QTL 9 | | 0.0169 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 68305037 | 85514044 | Rat | n/a | region | qtl |
| 1000 | 9589030 | Epfw9 | Epididymal fat weight QTL 9 | 19.24 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 10 | 46848346 | 91848346 | Rat | n/a | region | qtl |
| 1000 | 7411614 | Foco18 | Food consumption QTL 18 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 46848346 | 91848346 | Rat | n/a | region | qtl |
| 1000 | 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14827894 | 110992275 | Rat | n/a | region | qtl |
| 1000 | 631565 | Hcuc4 | Hepatic copper content QTL 4 | 4.15 | | hepatic copper amount (VT:0003065) | liver copper weight to liver dry weight ratio (CMO:0001512) | 10 | 69348459 | 75983662 | Rat | n/a | region | qtl |
| 1000 | 2300218 | Hpcl2 | Hepatic cholesterol level QTL 2 | | | liver cholesterol amount (VT:0010498) | liver cholesterol level (CMO:0001597) | 10 | 46593021 | 98939209 | Rat | n/a | region | qtl |
| 1000 | 1359017 | Hrtrt21 | Heart rate QTL 21 | 2.4 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 10 | 55224855 | 100224855 | Rat | n/a | region | qtl |
| 1000 | 2312672 | Insul15 | Insulin level QTL 15 | | 0.01 | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 10 | 60875260 | 105875260 | Rat | n/a | region | qtl |
| 1000 | 11565453 | Kidm58 | Kidney mass QTL 58 | | 0.002 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 10 | 68697928 | 70167191 | Rat | n/a | region | qtl |
| 1000 | 12880375 | Kidm66 | Kidney mass QTL 66 | | 0.009 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 10 | 68697928 | 70581793 | Rat | n/a | region | qtl |
| 1000 | 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9841807 | 108540162 | Rat | n/a | region | qtl |
| 1000 | 61402 | Niddm3 | Non-insulin dependent diabetes mellitus QTL 3 | 4.58 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 64648311 | 85513822 | Rat | n/a | region | qtl |
| 1000 | 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 24483076 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 1576311 | Pia26 | Pristane induced arthritis QTL 26 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 31919397 | 78343192 | Rat | n/a | region | qtl |
| 1000 | 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22901497 | 93886300 | Rat | n/a | region | qtl |
| 1000 | 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | 0.0041 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 10 | 41260363 | 106105607 | Rat | n/a | region | qtl |
| 1000 | 1549846 | Scl47 | Serum cholesterol level QTL 47 | 3.6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 53104718 | 98104718 | Rat | n/a | region | qtl |
| 1000 | 2312668 | Scl65 | Serum cholesterol level QTL 65 | | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 60875260 | 105875260 | Rat | n/a | region | qtl |
| 1000 | 2312662 | Slep8 | Serum leptin concentration QTL 8 | | 0.05 | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 10 | 60875260 | 105875260 | Rat | n/a | region | qtl |
| 1000 | 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | 0.00025 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 43289657 | 108540162 | Rat | n/a | region | qtl |
| 1000 | 1578779 | Tcas10 | Tongue tumor susceptibility QTL 10 | 3.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 10 | 33179030 | 78179030 | Rat | n/a | region | qtl |
| 1000 | 631530 | Tls3 | T-lymphoma susceptibility QTL 3 | 0 | 0.0001 | thymus integrity trait (VT:0010555) | percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911) | 10 | 53625815 | 98939209 | Rat | n/a | region | qtl |
| 1000 | 8662860 | Vetf10 | Vascular elastic tissue fragility QTL 10 | | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 10 | 6229095 | 75983805 | Rat | n/a | region | qtl |
| 1000 | 631552 | Vetf2 | Vascular elastic tissue fragility QTL 2 | 4.5 | 0.0002 | aorta elastic tissue integrity trait (VT:0010556) | artery internal elastic lamina non-tumorous lesion count (CMO:0001913) | 10 | 36185929 | 95845311 | Rat | n/a | region | qtl |