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| Relevance | RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | Annotations | Match | Type |
| 1000 | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 2138965 | 166875058 | Rat | n/a | region | qtl | ||
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40128307 | 148607290 | Rat | n/a | region | qtl | |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 46711509 | 161317411 | Rat | n/a | region | qtl | |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 59793399 | 143070159 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 60293434 | 161481680 | Rat | n/a | region | qtl |
| 1000 | 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 5 | 69540295 | 151018848 | Rat | n/a | region | qtl | |
| 1000 | 1302790 | Scl20 | Serum cholesterol level QTL 20 | 6.4 | 0.0001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 82394392 | 166664054 | Rat | n/a | region | qtl |
| 1000 | 61452 | Ciaa5 | CIA Autoantibody QTL 5 | 3.5 | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 5 | 94858972 | 143070159 | Rat | n/a | region | qtl | |
| 1000 | 1331796 | Thshl2 | Thyroid stimulating hormone level QTL 2 | 2.3 | blood thyroid-stimulating hormone amount (VT:0005119) | serum thyroid stimulating hormone level (CMO:0001248) | 5 | 97059760 | 147465714 | Rat | n/a | region | qtl | |
| 1000 | 1358187 | Emca1 | Estrogen-induced mammary cancer QTL 1 | 4.4 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 5 | 99216724 | 148607142 | Rat | n/a | region | qtl | |
| 1000 | 1578673 | Bmd13 | Bone mineral density QTL 13 | 4.9 | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 5 | 103689353 | 148689353 | Rat | n/a | region | qtl | |
| 1000 | 2317056 | Wbc3 | White blood cell count QTL 3 | 2.51 | 0.01 | leukocyte quantity (VT:0000217) | white blood cell count (CMO:0000027) | 5 | 105999803 | 150999803 | Rat | n/a | region | qtl |
| 1000 | 7207481 | Bss106 | Bone structure and strength QTL 106 | 7.9 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207486 | Bss109 | Bone structure and strength QTL 109 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | ||
| 1000 | 7207488 | Bss110 | Bone structure and strength QTL 1 | 8.4 | femur strength trait (VT:0010010) | femur stiffness (CMO:0001674) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207491 | Bss112 | Bone structure and strength QTL 112 | 7 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 1549838 | Bss4 | Bone structure and strength QTL 4 | 9.2 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 1598847 | Cm62 | Cardiac mass QTL 62 | 3.4 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl | |
| 1000 | 1298089 | Scl14 | Serum cholesterol level QTL 14 | 5.8 | 0.0004 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl |
| 1000 | 8657050 | Bw146 | Body weight QTL 146 | 19.84 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 108938288 | 153938288 | Rat | n/a | region | qtl |
| 1000 | 8694198 | Abfw3 | Abdominal fat weight QTL 3 | 16.13 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694389 | Bw160 | Body weight QTL 160 | 6.17 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694441 | Bw169 | Body weight QTL 169 | 17.61 | 0.001 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8552960 | Pigfal15 | Plasma insulin-like growth factor 1 level QTL 15 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl | ||
| 1000 | 2293642 | Bss37 | Bone structure and strength QTL 37 | 4.64 | 0.0001 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 120740824 | 151018848 | Rat | n/a | region | qtl |
| 1000 | 1581510 | Cm54 | Cardiac mass QTL 54 | 3.4 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 5 | 120740824 | 143608494 | Rat | n/a | region | qtl |
| 1000 | 1641920 | Colcs1 | Colorectal carcinoma susceptibility QTL 1 | 2.99 | 0.0055 | intestine integrity trait (VT:0010554) | benign colorectal tumor surface area measurement (CMO:0001799) | 5 | 121846814 | 166846814 | Rat | n/a | region | qtl |
| 1000 | 10053720 | Scort26 | Serum corticosterone level QTL 26 | 2.06 | 0.0147 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 5 | 124965598 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 724525 | Bp147 | Blood pressure QTL 147 | 4.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 126424772 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 1598819 | Bp292 | Blood pressure QTL 292 | 4.3 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 127798274 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 1598861 | Cm64 | Cardiac mass QTL 64 | 2.9 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 127798274 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 8694169 | Bw148 | Body weight QTL 148 | 5 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 128506074 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 8552908 | Pigfal4 | Plasma insulin-like growth factor 1 level QTL 4 | 6.6 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 128506074 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 634349 | Bp139 | Blood pressure QTL 139 | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 128924607 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 1331803 | Rf32 | Renal function QTL 32 | 2.798 | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 129132428 | 143070159 | Rat | n/a | region | qtl | |
| 1000 | 70156 | Niddm30 | Non-insulin dependent diabetes mellitus QTL 30 | 3.98 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 5 | 129132447 | 151006154 | Rat | n/a | region | qtl | |
| 1000 | 738018 | Anxrr4 | Anxiety related response QTL 4 | 5.1 | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 5 | 130130159 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 7794791 | Mcs33 | Mammary carcinoma susceptibility QTL 33 | 1.93 | mammary gland integrity trait (VT:0010552) | mammary tumor incidence/prevalence measurement (CMO:0000946) | 5 | 131345754 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 631505 | Bp103 | Blood pressure QTL 103 | 3.2 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 132717196 | 165560427 | Rat | n/a | region | qtl | |
| 1000 | 631562 | Apr2 | Acute phase response QTL 2 | 3.7 | blood murinoglobulin 1 amount (VT:0010597) | plasma murinoglobulin 1 level (CMO:0001931) | 5 | 135927956 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 61444 | Strs2 | Sensitivity to stroke QTL 2 | 4.7 | cerebrum integrity trait (VT:0010549) | post-insult time to onset of cerebrovascular lesion (CMO:0002343) | 5 | 135929696 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 634336 | Anxrr17 | Anxiety related response QTL 17 | 3.66 | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 924703 | 115097879 | Rat | n/a | region | qtl | |
| 1000 | 1643004 | Pain2 | Pain QTL 2 | 1 | mechanical nociception trait (VT:0002734) | self mutilation severity score (CMO:0002145) | 7 | 9462246 | 98011544 | Rat | n/a | region | qtl | |
| 1000 | 1300132 | Bp182 | Blood pressure QTL 182 | 3.49 | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 7 | 19654317 | 84928080 | Rat | n/a | region | qtl | |
| 1000 | 1641885 | Alcrsp9 | Alcohol response QTL 9 | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 7 | 24099606 | 69099606 | Rat | n/a | region | qtl | ||
| 1000 | 1549840 | Bss5 | Bone structure and strength QTL 5 | 9.8 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 7 | 24751841 | 69751841 | Rat | n/a | region | qtl | |
| 1000 | 10402855 | Bp379 | Blood pressure QTL 379 | 0.21 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 29409683 | 74409683 | Rat | n/a | region | qtl | |
| 1000 | 1300127 | Srn1 | Serum renin concentration QTL 1 | 3.87 | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 7 | 29409683 | 84928080 | Rat | n/a | region | qtl | |
| 1000 | 10755453 | Coatc12 | Coat color QTL 12 | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 31112832 | 76112832 | Rat | n/a | region | qtl | |
| 1000 | 7411605 | Foco14 | Food consumption QTL 14 | 24.1 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 7 | 34293282 | 79293282 | Rat | n/a | region | qtl |
| 1000 | 631534 | Lnnr1 | Liver neoplastic nodule remodeling QTL 1 | 3.85 | 0.001 | liver integrity trait (VT:0010547) | liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705) | 7 | 34293282 | 79293282 | Rat | n/a | region | qtl |
| 1000 | 631513 | Scl7 | Serum cholesterol level QTL 7 | 4.1 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 7 | 37960569 | 82960569 | Rat | n/a | region | qtl | |
| 1000 | 61357 | Bp38 | Blood pressure QTL 38 | 1.6 | 0.052 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 41333674 | 119109060 | Rat | n/a | region | qtl |
| 1000 | 634326 | Hc3 | Hypercalciuria QTL 3 | 2.1 | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 7 | 42787314 | 87787314 | Rat | n/a | region | qtl | |
| 1000 | 10053722 | Scort27 | Serum corticosterone level QTL 27 | 2.41 | 0.0083 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 7 | 43228750 | 88228750 | Rat | n/a | region | qtl |
| 1000 | 1300179 | Kidm5 | Kidney mass QTL 5 | 3.51 | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 7 | 43747012 | 135012528 | Rat | n/a | region | qtl | |
| 1000 | 1358361 | Sradr5 | Stress Responsive Adrenal Weight QTL 5 | 5.55 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 7 | 43747012 | 108555253 | Rat | n/a | region | qtl | |
| 1000 | 1300149 | Cm6 | Cardiac mass QTL 6 | 4.09 | heart mass (VT:0007028) | heart left ventricle weight to body weight ratio (CMO:0000530) | 7 | 43747099 | 102228765 | Rat | n/a | region | qtl | |
| 1000 | 631504 | Cm27 | Cardiac mass QTL 27 | 3.45 | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 7 | 44421311 | 118198041 | Rat | n/a | region | qtl | |
| 1000 | 61428 | Scl3 | Serum cholesterol level QTL 3 | 3.2 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 7 | 44867533 | 89867533 | Rat | n/a | region | qtl | |
| 1000 | 738030 | Anxrr8 | Anxiety related response QTL 8 | 4.1 | exploratory behavior trait (VT:0010471) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 46590070 | 91590070 | Rat | n/a | region | qtl | |
| 1000 | 2293685 | Bmd21 | Bone mineral density QTL 21 | 4.2 | 0.0003 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293644 | Bmd29 | Bone mineral density QTL 29 | 5.4 | 0.0001 | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293696 | Bmd32 | Bone mineral density QTL 32 | 5.1 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2300178 | Bmd54 | Bone mineral density QTL 54 | 5.3 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293678 | Bss24 | Bone structure and strength QTL 24 | 6.71 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293707 | Bss32 | Bone structure and strength QTL 32 | 7.64 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 2293667 | Bss42 | Bone structure and strength QTL 42 | 7.25 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 7 | 47651439 | 92651439 | Rat | n/a | region | qtl |
| 1000 | 1300151 | Bp181 | Blood pressure QTL 181 | 3.36 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 7 | 53612714 | 103945643 | Rat | n/a | region | qtl | |
| 1000 | 2317035 | Aia16 | Adjuvant induced arthritis QTL 16 | 2.71 | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 7 | 59238038 | 104238038 | Rat | n/a | region | qtl | |
| 1000 | 1298528 | Bp169 | Blood pressure QTL 169 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 61074194 | 106074194 | Rat | n/a | region | qtl | |
| 1000 | 1559283 | Emca4 | Estrogen-induced mammary cancer QTL 4 | 3.7 | mammary gland integrity trait (VT:0010552) | percentage of study population developing mammary tumors during a period of time (CMO:0000948) | 7 | 62004452 | 101773158 | Rat | n/a | region | qtl | |
| 1000 | 1576303 | Ept7 | Estrogen-induced pituitary tumorigenesis QTL 7 | 3.7 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 7 | 62004452 | 101773158 | Rat | n/a | region | qtl | |
| 1000 | 70173 | Niddm19 | Non-insulin dependent diabetes mellitus QTL 19 | 4.33 | 0.00005 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 7 | 64002457 | 135012528 | Rat | n/a | region | qtl |
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