| 1000 | 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 24483076 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 1598852 | Anxrr19 | Anxiety related response QTL 19 | 5.07 | | body movement coordination trait (VT:0005424) | number of rearing movements in an experimental apparatus (CMO:0001752) | 10 | 19402814 | 64402814 | Rat | n/a | region | qtl |
| 1000 | 631564 | Apr3 | Acute phase response QTL 3 | 3.9 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 10 | 16468736 | 61468736 | Rat | n/a | region | qtl |
| 1000 | 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 20170031 | 102897474 | Rat | n/a | region | qtl |
| 1000 | 2300171 | Bmd58 | Bone mineral density QTL 58 | 4.9 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 28789280 | 73789280 | Rat | n/a | region | qtl |
| 1000 | 631554 | Bp133 | Blood pressure QTL 133 | | 0.005 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 764421 | 66221621 | Rat | n/a | region | qtl |
| 1000 | 631557 | Bp136 | Blood pressure QTL 136 | | 0.003 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 33343192 | 78343192 | Rat | n/a | region | qtl |
| 1000 | 724527 | Bp148 | Blood pressure QTL 148 | | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 30983805 | 75983805 | Rat | n/a | region | qtl |
| 1000 | 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 27237530 | 101482600 | Rat | n/a | region | qtl |
| 1000 | 2292441 | Bp308 | Blood pressure QTL 308 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 30099909 | 75099909 | Rat | n/a | region | qtl |
| 1000 | 10402859 | Bp381 | Blood pressure QTL 381 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 30099909 | 75099909 | Rat | n/a | region | qtl |
| 1000 | 70223 | Bp57 | Blood pressure QTL 57 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 21523906 | 83549467 | Rat | n/a | region | qtl |
| 1000 | 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 27237530 | 102427718 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 1 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 70198 | BpQTLcluster9 | Blood pressure QTL cluster 9 | 2.94 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 21523906 | 90312401 | Rat | n/a | region | qtl |
| 1000 | 2293680 | Bss40 | Bone structure and strength QTL 40 | 5.66 | 0.0001 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 10 | 1 | 35538813 | Rat | n/a | region | qtl |
| 1000 | 61441 | Btemp1 | Thermal response to stress QTL 1 | 4 | | body temperature trait (VT:0005535) | core body temperature (CMO:0001036) | 10 | 36584560 | 66015527 | Rat | n/a | region | qtl |
| 1000 | 6893352 | Bw100 | Body weight QTL 100 | 0.33 | 0.6 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 17121542 | 62121542 | Rat | n/a | region | qtl |
| 1000 | 6893350 | Bw99 | Body weight QTL 99 | 0.87 | 0.16 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 17121542 | 62121542 | Rat | n/a | region | qtl |
| 1000 | 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6429075 | 99492409 | Rat | n/a | region | qtl |
| 1000 | 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 24483076 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14827894 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 1576319 | Cia29 | Collagen induced arthritis QTL 29 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 35139424 | 80139424 | Rat | n/a | region | qtl |
| 1000 | 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 23861015 | 112626471 | Rat | n/a | region | qtl |
| 1000 | 631532 | Cm50 | Cardiac mass QTL 50 | 6.6 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 18246394 | 53637634 | Rat | n/a | region | qtl |
| 1000 | 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14827894 | 92423564 | Rat | n/a | region | qtl |
| 1000 | 6893342 | Cm78 | Cardiac mass QTL 78 | 0.1 | 0.88 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 36185929 | 82675365 | Rat | n/a | region | qtl |
| 1000 | 70224 | Eae3 | Experimental allergic encephalomyelitis QTL 3 | 4.1 | | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) | 10 | 27237530 | 64648311 | Rat | n/a | region | qtl |
| 1000 | 61332 | Eau3 | Experimental allergic uveoretinitis QTL 3 | | 0.004 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 35669465 | 46851407 | Rat | n/a | region | qtl |
| 1000 | 2298480 | Eau7 | Experimental allergic uveoretinitis QTL 7 | | 0.0049 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 35669573 | 36185929 | Rat | n/a | region | qtl |
| 1000 | 1581497 | Esta1 | Estrogen-induced thymic atrophy QTL 1 | | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 10 | 21707766 | 64648311 | Rat | n/a | region | qtl |
| 1000 | 7411611 | Foco17 | Food consumption QTL 17 | 18.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 1 | 42669970 | Rat | n/a | region | qtl |
| 1000 | 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14827894 | 110992275 | Rat | n/a | region | qtl |
| 1000 | 634327 | Hc4 | Hypercalciuria QTL 4 | 2.4 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 10 | 1 | 38594330 | Rat | n/a | region | qtl |
| 1000 | 631660 | Hcar1 | Hepatocarcinoma resistance QTL 1 | 3.4 | 0.0001 | liver integrity trait (VT:0010547) | volume of individual liver tumorous lesion (CMO:0001078) | 10 | 6229289 | 36185929 | Rat | n/a | region | qtl |
| 1000 | 1354614 | Hpcl1 | Hepatic cholesterol level QTL 1 | 3.3 | | liver cholesterol amount (VT:0010498) | liver cholesterol level (CMO:0001597) | 10 | 36584373 | 53645194 | Rat | n/a | region | qtl |
| 1000 | 9589136 | Insul27 | Insulin level QTL 27 | 10.46 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 10 | 12639513 | 57639513 | Rat | n/a | region | qtl |
| 1000 | 631531 | Iresp2 | Immunoglobin response QTL2 | 6.3 | | blood immunoglobulin E amount (VT:0002492) | serum total immunoglobulin E level (CMO:0001542) | 10 | 22402817 | 38204229 | Rat | n/a | region | qtl |
| 1000 | 1354587 | Kidm21 | Kidney mass QTL 21 | 3.3 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 10 | 15375474 | 62469074 | Rat | n/a | region | qtl |
| 1000 | 10401803 | Kidm50 | Kidney mass QTL 50 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 10 | 1 | 44902893 | Rat | n/a | region | qtl |
| 1000 | 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9841807 | 108540162 | Rat | n/a | region | qtl |
| 1000 | 1600371 | Mcs21 | Mammary carcinoma susceptibility QTL 21 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 30021354 | 54057745 | Rat | n/a | region | qtl |
| 1000 | 2298544 | Neuinf9 | Neuroinflammation QTL 9 | 4.6 | | nervous system integrity trait (VT:0010566) | spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) | 10 | 5877536 | 64401490 | Rat | n/a | region | qtl |
| 1000 | 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 24483076 | 107857673 | Rat | n/a | region | qtl |
| 1000 | 634329 | Pia15 | Pristane induced arthritis QTL 15 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 24884084 | 47487910 | Rat | n/a | region | qtl |
| 1000 | 1576311 | Pia26 | Pristane induced arthritis QTL 26 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 31919397 | 78343192 | Rat | n/a | region | qtl |
| 1000 | 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22901497 | 93886300 | Rat | n/a | region | qtl |
| 1000 | 1331762 | Rf40 | Renal function QTL 40 | 3.873 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 10 | 23861015 | 66539843 | Rat | n/a | region | qtl |
| 1000 | 9590268 | Scort13 | Serum corticosterone level QTL 13 | 3.26 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 12639513 | 57639513 | Rat | n/a | region | qtl |
| 1000 | 9590310 | Scort19 | Serum corticosterone level QTL 19 | 6.3 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 12639513 | 57639513 | Rat | n/a | region | qtl |
| 1000 | 1578761 | Stresp21 | Stress response QTL 21 | 3.3 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 10 | 7521450 | 52521450 | Rat | n/a | region | qtl |
| 1000 | 1358897 | Stresp6 | Stress response QTL 6 | 4.17 | 0.022 | blood norepinephrine amount (VT:0005663) | plasma norepinephrine level (CMO:0001010) | 10 | 36584373 | 66539843 | Rat | n/a | region | qtl |
| 1000 | 1578779 | Tcas10 | Tongue tumor susceptibility QTL 10 | 3.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 10 | 33179030 | 78179030 | Rat | n/a | region | qtl |
| 1000 | 8662860 | Vetf10 | Vascular elastic tissue fragility QTL 10 | | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 10 | 6229095 | 75983805 | Rat | n/a | region | qtl |
| 1000 | 631552 | Vetf2 | Vascular elastic tissue fragility QTL 2 | 4.5 | 0.0002 | aorta elastic tissue integrity trait (VT:0010556) | artery internal elastic lamina non-tumorous lesion count (CMO:0001913) | 10 | 36185929 | 95845311 | Rat | n/a | region | qtl |