| 1000 | 738022 | Anxrr13 | Anxiety related response QTL 13 | 4.6 | 0.00039 | locomotor behavior trait (VT:0001392) | number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514) | 1 | 91093646 | 136093646 | Rat | n/a | region | qtl |
| 1000 | 2313402 | Anxrr24 | Anxiety related response QTL 24 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 1 | 49147799 | 156446783 | Rat | n/a | region | qtl |
| 1000 | 2300164 | Bmd44 | Bone mineral density QTL 44 | 5.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 1 | 58209327 | 103209327 | Rat | n/a | region | qtl |
| 1000 | 2313098 | Bmd70 | Bone mineral density QTL 70 | 3.6 | 0.0001 | tibia mineral mass (VT:1000283) | cortical volumetric bone mineral density (CMO:0001730) | 1 | 43579208 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 2313083 | Bmd74 | Bone mineral density QTL 74 | 4 | 0.0001 | tibia mineral mass (VT:1000283) | total volumetric bone mineral density (CMO:0001728) | 1 | 83656882 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 631656 | Bp108 | Blood pressure QTL 108 | 5.97 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 54177542 | 99177542 | Rat | n/a | region | qtl |
| 1000 | 1300153 | Bp171 | Blood pressure QTL 171 | 3.37 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 1 | 94364073 | 153076991 | Rat | n/a | region | qtl |
| 1000 | 1300134 | Bp185 | Blood pressure QTL 185 | 3.73 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 66757444 | 112943287 | Rat | n/a | region | qtl |
| 1000 | 1549903 | Bp267 | Blood pressure QTL 267 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 79134941 | 113593716 | Rat | n/a | region | qtl |
| 1000 | 61342 | Bp27 | Blood pressure QTL 27 | 3.4 | 0.0006 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 57761301 | 104391981 | Rat | n/a | region | qtl |
| 1000 | 61344 | Bp29 | Blood pressure QTL 29 | 7.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 85779320 | 130779320 | Rat | n/a | region | qtl |
| 1000 | 2303178 | Bp334 | Blood pressure QTL 334 | 3.7 | 0.01 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 83686153 | 98164303 | Rat | n/a | region | qtl |
| 1000 | 2303178 | Bp334 | Blood pressure QTL 334 | 3.7 | 0.01 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 9 | 83686153 | 98164303 | Rat | n/a | region | qtl |
| 1000 | 2303178 | Bp334 | Blood pressure QTL 334 | 3.7 | 0.01 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 83686153 | 98164303 | Rat | n/a | region | qtl |
| 1000 | 7421628 | Bp361 | Blood pressure QTL 361 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 64588516 | 125875986 | Rat | n/a | region | qtl |
| 1000 | 10059597 | Bp377 | Blood pressure QTL 377 | 3.42 | 0.025 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 35377692 | 217372257 | Rat | n/a | region | qtl |
| 1000 | 70225 | Bp58 | Blood pressure QTL 58 | 3.3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 34993530 | 173445086 | Rat | n/a | region | qtl |
| 1000 | 631495 | Bp96 | Blood pressure QTL 96 | 4.52 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 23406428 | 108057505 | Rat | n/a | region | qtl |
| 1000 | 1578654 | Bss10 | Bone structure and strength QTL 10 | 4 | | femur morphology trait (VT:0000559) | femoral neck cortical cross-sectional area (CMO:0001702) | 1 | 49578577 | 169852184 | Rat | n/a | region | qtl |
| 1000 | 2313072 | Bss53 | Bone structure and strength QTL 53 | 4.3 | 0.0001 | tibia length (VT:0004357) | tibia length (CMO:0000450) | 1 | 43579208 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 2313078 | Bss54 | Bone structure and strength QTL 54 | 3.5 | 0.0001 | tibia area (VT:1000281) | tibia midshaft cross-sectional area (CMO:0001717) | 1 | 43579208 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 2313059 | Bss55 | Bone structure and strength QTL 55 | 3.2 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 1 | 43579208 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 2313099 | Bss56 | Bone structure and strength QTL 56 | 2.4 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 1 | 43579208 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 2313051 | Bss57 | Bone structure and strength QTL 57 | 3.7 | 0.0001 | tibia strength trait (VT:1000284) | bone polar moment of inertia (CMO:0001558) | 1 | 43579208 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 2313094 | Bss58 | Bone structure and strength QTL 58 | 3.7 | 0.0001 | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 1 | 43579208 | 126240667 | Rat | n/a | region | qtl |
| 1000 | 4889943 | Bss90 | Bone structure and strength QTL 90 | 4.1 | | tibia area (VT:1000281) | tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722) | 9 | 92741297 | 98606834 | Rat | n/a | region | qtl |
| 1000 | 1354626 | Bvd1 | Brain ventricular dilatation QTL 1 | 3.73 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 9 | 81411073 | 119983851 | Rat | n/a | region | qtl |
| 1000 | 1358902 | Bw47 | Body weight QTL 47 | 1.67 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 94201400 | 197187904 | Rat | n/a | region | qtl |
| 1000 | 724529 | Cm16 | Cardiac mass QTL 16 | 2.7 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 1 | 90804143 | 161321256 | Rat | n/a | region | qtl |
| 1000 | 724547 | Cm21 | Cardiac mass QTL 21 | 2.7 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 9 | 83686153 | 111609081 | Rat | n/a | region | qtl |
| 1000 | 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 1 | 82788437 | 239853971 | Rat | n/a | region | qtl |
| 1000 | 1578760 | Cm53 | Cardiac mass QTL 53 | 3.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 61186278 | 106186278 | Rat | n/a | region | qtl |
| 1000 | 61385 | Edpm9 | Estrogen-dependent pituitary mass QTL 9 | 3.43 | 0.05 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 9 | 70241351 | 115241351 | Rat | n/a | region | qtl |
| 1000 | 2300324 | Fetw1 | Fetal weight QTL 1 | 12.1 | 0.005 | fetal growth trait (VT:0004201) | fetal body weight (CMO:0002080) | 1 | 88634585 | 106002500 | Rat | n/a | region | qtl |
| 1000 | 731171 | Glom6 | Glomerulus QTL 6 | 2.8 | 0.0003 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 9 | 70942881 | 115942881 | Rat | n/a | region | qtl |
| 1000 | 1582234 | Gluco18 | Glucose level QTL 18 | 3.4 | 0.0003 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 85917265 | 130917265 | Rat | n/a | region | qtl |
| 1000 | 10054135 | Gmadr2 | Adrenal mass QTL 2 | 1.97 | 0.0129 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 1 | 83502376 | 128502376 | Rat | n/a | region | qtl |
| 1000 | 10058949 | Gmadr5 | Adrenal mass QTL 5 | 2 | 0.014 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight to body weight ratio (CMO:0002411) | 9 | 47248965 | 94124663 | Rat | n/a | region | qtl |
| 1000 | 631688 | Hcas2 | Hepatocarcinoma susceptibility QTL 2 | 3 | 0.0001 | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 5655769 | 122614963 | Rat | n/a | region | qtl |
| 1000 | 1300121 | Hrtrt1 | Heart rate QTL 1 | 3.7 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 1 | 66113339 | 122614963 | Rat | n/a | region | qtl |
| 1000 | 7794784 | Mcs31 | Mammary carcinoma susceptibility QTL 31 | 2.98 | | mammary gland integrity trait (VT:0010552) | mammary tumor incidence/prevalence measurement (CMO:0000946) | 9 | 90024661 | 119983851 | Rat | n/a | region | qtl |
| 1000 | 2298545 | Neuinf8 | Neuroinflammation QTL 8 | 4.6 | | nervous system integrity trait (VT:0010566) | spinal cord beta-2 microglobulin mRNA level (CMO:0002125) | 1 | 58354072 | 161711996 | Rat | n/a | region | qtl |
| 1000 | 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 49578693 | 217054291 | Rat | n/a | region | qtl |
| 1000 | 4889852 | Pur26 | Proteinuria QTL 26 | 15 | 0.001 | total urine protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 9 | 90024661 | 107199079 | Rat | n/a | region | qtl |
| 1000 | 1578757 | Pur6 | Proteinuria QTL 6 | 3.3 | 0.005 | total urine protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 9 | 67451664 | 99920892 | Rat | n/a | region | qtl |
| 1000 | 1302788 | Scl19 | Serum cholesterol QTL 19 | 4.6 | 0.001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 1 | 94225372 | 130917265 | Rat | n/a | region | qtl |
| 1000 | 2290450 | Scl57 | Serum cholesterol level QTL 57 | 4.15 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 9 | 41261034 | 102531865 | Rat | n/a | region | qtl |
| 1000 | 4889494 | Scort2 | Serum corticosterone level QTL 2 | 4.2 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 1 | 86776571 | 131776571 | Rat | n/a | region | qtl |
| 1000 | 1358359 | Sradr1 | Stress Responsive Adrenal Weight QTL 1 | 4.74 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 1 | 25951907 | 130917265 | Rat | n/a | region | qtl |
| 1000 | 10054125 | Srcrt7 | Stress Responsive Cort QTL 7 | 3.33 | 0.0011 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 9 | 1055222 | 93442944 | Rat | n/a | region | qtl |
| 1000 | 7411712 | Strs4 | Sensitivity to stroke QTL 4 | 8.7 | | cerebrum integrity trait (VT:0010549) | percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932) | 1 | 79689548 | 124689548 | Rat | n/a | region | qtl |
| 1000 | 724567 | Tcas6 | Tongue tumor susceptibility QTL 6 | 6.85 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 1 | 95304961 | 156446783 | Rat | n/a | region | qtl |
| 1000 | 724521 | Uae1 | Urinary albumin excretion QTL 1 | 3.8 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 94201400 | 184846632 | Rat | n/a | region | qtl |
| 1000 | 724515 | Uae16 | Urinary albumin excretion QTL 16 | 8 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 63270073 | 107878387 | Rat | n/a | region | qtl |
| 1000 | 731164 | Uae25 | Urinary albumin excretion QTL 25 | 3.5 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 29466970 | 107878528 | Rat | n/a | region | qtl |
| 1000 | 1581580 | Uae34 | Urinary albumin excretion QTL 34 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 67451664 | 99920892 | Rat | n/a | region | qtl |
| 1000 | 724544 | Uae9 | Urinary albumin excretion QTL 9 | 4.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 9 | 29075079 | 122095297 | Rat | n/a | region | qtl |
| 1000 | 8662828 | Vetf6 | Vascular elastic tissue fragility QTL 6 | 3.9 | | artery integrity trait (VT:0010639) | patent ductus arteriosus score (CMO:0002566) | 9 | 41261034 | 98606834 | Rat | n/a | region | qtl |