| 1000 | 2506 | Dlx5 | distal-less homeobox 5 | | 4 | 34999139 | 35003504 | Rat | n/a | Region | gene |
| 999 | 3218 | Nxph1 | neurexophilin 1 | | 4 | 36998068 | 37311135 | Rat | n/a | Region | gene |
| 998 | 3600 | Rps4x-ps9 | ribosomal protein S4, X-linked, pseudogene 9 | | 4 | 37758373 | 37759289 | Rat | n/a | Region | gene |
| 997 | 3807 | Tac1 | tachykinin, precursor 1 | | 4 | 35679183 | 35687180 | Rat | n/a | Region | gene |
| 996 | 621465 | Ica1 | islet cell autoantigen 1 | | 4 | 36656475 | 36804705 | Rat | n/a | Region | gene |
| 995 | 1303037 | Tmem106b | transmembrane protein 106B | | 4 | 41328125 | 41347315 | Rat | n/a | Region | gene |
| 994 | 621105 | C1galt1 | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 | | 4 | 35930981 | 35966100 | Rat | n/a | Region | gene |
| 993 | 2162 | Asns | asparagine synthetase (glutamine-hydrolyzing) | | 4 | 35784995 | 35803474 | Rat | n/a | Region | gene |
| 992 | 1306810 | Rpa3 | replication protein A3 | | 4 | 36304649 | 36307755 | Rat | n/a | Region | gene |
| 991 | 71011 | Gpr85 | G protein-coupled receptor 85 | | 4 | 42100138 | 42109584 | Rat | n/a | Region | gene |
| 990 | 1305143 | Sdhaf3 | succinate dehydrogenase complex assembly factor 3 | | 4 | 35100533 | 35160740 | Rat | n/a | Region | gene |
| 989 | 1307778 | Tmem168 | transmembrane protein 168 | | 4 | 41830623 | 41858763 | Rat | n/a | Region | gene |
| 988 | 1308432 | Mios | meiosis regulator for oocyte development | | 4 | 36263419 | 36289546 | Rat | n/a | Region | gene |
| 987 | 1309532 | Mdfic | MyoD family inhibitor domain containing | | 4 | 43972310 | 44052162 | Rat | n/a | Region | gene |
| 986 | 1564680 | Col28a1 | collagen type XXVIII alpha 1 chain | | 4 | 36069980 | 36223128 | Rat | n/a | Region | gene |
| 985 | 1560448 | Yae1l1 | YAE1 maturation factor of ABCE1 like 1 | | 4 | 37917837 | 37918511 | Rat | n/a | Region | gene |
| 984 | 1561312 | Ppp1r3a | protein phosphatase 1, regulatory subunit 3A | | 4 | 42937353 | 42980195 | Rat | n/a | Region | gene |
| 983 | 1565400 | Actc1-ps1 | actin, alpha, cardiac muscle 1, pseudogene 1 | | 4 | 37620820 | 37622087 | Rat | n/a | Region | gene |
| 982 | 1566237 | Rpl35-ps9 | ribosomal protein L35, pseudogene 9 | | 4 | 34873968 | 34874422 | Rat | n/a | Region | gene |
| 981 | 1561223 | Vwde | von Willebrand factor D and EGF domains | | 4 | 41453573 | 41525421 | Rat | n/a | Region | gene |
| 980 | 1563764 | Phf14 | PHD finger protein 14 | | 4 | 40009691 | 40195877 | Rat | n/a | Region | gene |
| 979 | 1559697 | Foxp2 | forkhead box P2 | | 4 | 43133827 | 43712442 | Rat | n/a | Region | gene |
| 978 | 1566201 | Thsd7a | thrombospondin type 1 domain containing 7A | | 4 | 40461124 | 40899345 | Rat | n/a | Region | gene |
| 977 | 1584730 | Stmnl-ps2 | stathmin like, pseudogene 2 | | 4 | 39769684 | 39770132 | Rat | n/a | Region | gene |
| 976 | 1585861 | Nsa2-ps9 | NSA2 ribosome biogenesis factor, pseudogene 9 | | 4 | 37561188 | 37561974 | Rat | n/a | Region | gene |
| 975 | 1584719 | Ndufa4 | Ndufa4, mitochondrial complex associated | | 4 | 40002216 | 40009384 | Rat | n/a | Region | gene |
| 974 | 1585845 | Rbmxl1b | Rbmx like 1B | | 4 | 43956275 | 43957957 | Rat | n/a | Region | gene |
| 973 | 1585825 | Hmgn1l1 | high mobility group nucleosomal binding domain 1 like 1 | | 4 | 38604856 | 38606026 | Rat | n/a | Region | gene |
| 972 | 1563612 | Glcci1 | glucocorticoid induced 1 | | 4 | 36307956 | 36635614 | Rat | n/a | Region | gene |
| 971 | 1564521 | Tas2r7l | taste receptor type 2 member 7-like | | 4 | 41569536 | 41570447 | Rat | n/a | Region | gene |
| 970 | 1562387 | Gtpbp4-ps3 | GTP binding protein 4, pseudogene 3 | | 4 | 39391079 | 39425066 | Rat | n/a | Region | gene |
| 969 | 1583532 | Gnpnat1-ps1 | glucosamine-phosphate N-acetyltransferase 1, pseudogene 1 | | 4 | 41548872 | 41549774 | Rat | n/a | Region | gene |
| 968 | 1561539 | Dlx6 | distal-less homeobox 6 | | 4 | 34984264 | 34989926 | Rat | n/a | Region | gene |
| 967 | 1588441 | Bmt2 | base methyltransferase of 25S rRNA 2 homolog | | 4 | 41881630 | 41945472 | Rat | n/a | Region | gene |
| 966 | 1587202 | Pkm-ps19 | pyruvate kinase M1/2, pseudogene 19 | | 4 | 41156138 | 41277227 | Rat | n/a | Region | gene |
| 965 | 1590628 | Sem1 | SEM1 26S proteasome subunit | | 4 | 34671848 | 34692005 | Rat | n/a | Region | gene |
| 964 | 1597981 | Hnrnpa1-ps53 | heterogeneous nuclear ribonucleoprotein A1, pseudogene 53 | | 4 | 42460880 | 42461983 | Rat | n/a | Region | gene |
| 963 | 1589400 | Rps25-ps4 | ribosomal protein S25, pseudogene 4 | | 4 | 35271720 | 35272156 | Rat | n/a | Region | gene |
| 962 | 2322154 | Psma6-ps3 | proteasome 20S subunit alpha 6, pseudogene 3 | | 4 | 39191570 | 39192321 | Rat | n/a | Region | gene |
| 961 | 2322826 | Smim30l1 | small integral membrane protein 30 like 1 | | 4 | 42141696 | 42143340 | Rat | n/a | Region | gene |
| 960 | 2322347 | Tomm20-ps2 | translocase of outer mitochondrial membrane 20, pseudogene 2 | | 4 | 38013227 | 38013802 | Rat | n/a | Region | gene |
| 959 | 2323857 | Plscr2-ps1 | phospholipid scramblase 2, pseudogene 1 | | 4 | 42236157 | 42358953 | Rat | n/a | Region | gene |
| 958 | 6488535 | LOC100912227 | uncharacterized LOC100912227 | | 4 | 34943271 | 34993044 | Rat | n/a | Region | gene |
| 957 | 6493676 | LOC100911252 | peptidyl-prolyl cis-trans isomerase A-like | | 4 | 41828873 | 41829619 | Rat | n/a | Region | gene |
| 956 | 7526246 | LOC102550307 | uncharacterized LOC102550307 | | 4 | 36018680 | 36040591 | Rat | n/a | Region | gene |
| 955 | 7641224 | Rps2-ps40 | ribosomal protein S2, pseudogene 40 | | 4 | 40682192 | 40683121 | Rat | n/a | Region | gene |
| 954 | 7657264 | LOC102554854 | uncharacterized LOC102554854 | | 4 | 34414911 | 34438788 | Rat | n/a | Region | gene |
| 953 | 7609534 | LOC102548489 | uncharacterized LOC102548489 | | 4 | 41694460 | 41701116 | Rat | n/a | Region | gene |
| 952 | 7596691 | LOC102547989 | uncharacterized LOC102547989 | | 4 | 39598604 | 39678420 | Rat | n/a | Region | gene |
| 951 | 7545679 | Lyrm4-ps1 | LYR motif containing 4, pseudogene 1 | | 4 | 41870039 | 41878699 | Rat | n/a | Region | gene |
| 950 | 7715339 | LOC102550643 | uncharacterized LOC102550643 | | 4 | 36780884 | 36787735 | Rat | n/a | Region | gene |
| 949 | 9229365 | LOC103692052 | uncharacterized LOC103692052 | | 4 | 34439116 | 34447138 | Rat | n/a | Region | gene |
| 948 | 9330178 | LOC103692074 | 60 kDa heat shock protein, mitochondrial pseudogene | | 4 | 40721369 | 40732042 | Rat | n/a | Region | gene |
| 947 | 9388809 | Polr1d-ps1 | RNA polymerase I and III subunit D, pseudogene 1 | | 4 | 35927578 | 35928571 | Rat | n/a | Region | gene |
| 946 | 11363596 | LOC108350856 | uncharacterized LOC108350856 | | 4 | 40937013 | 40945223 | Rat | n/a | Region | gene |
| 945 | 11453897 | LOC108350853 | uncharacterized LOC108350853 | | 4 | 35296870 | 35304056 | Rat | n/a | Region | gene |
| 944 | 11516558 | LOC108350855 | 40S ribosomal protein S23 pseudogene | | 4 | 38263194 | 38263628 | Rat | n/a | Region | gene |
| 943 | 41140158 | LOC120102687 | small nucleolar RNA SNORA17 | | 4 | 40309057 | 40309173 | Rat | n/a | Region | gene |
| 942 | 41211262 | LOC120102776 | U4 spliceosomal RNA | | 4 | 34692803 | 34692885 | Rat | n/a | Region | gene |
| 941 | 41264909 | LOC120102634 | small nucleolar RNA SNORA44 | | 4 | 41869435 | 41869561 | Rat | n/a | Region | gene |
| 940 | 41397044 | Set-ps6 | Set nuclear proto-oncogene, pseudogene 6 | | 4 | 35744280 | 35747371 | Rat | n/a | Region | gene |
| 939 | 41230048 | LOC120102706 | small nucleolar RNA SNORA17 | | 4 | 42398832 | 42398962 | Rat | n/a | Region | gene |
| 938 | 41375555 | LOC120102231 | uncharacterized LOC120102231 | | 4 | 34592652 | 34594248 | Rat | n/a | Region | gene |
| 937 | 40971411 | LOC120102154 | uncharacterized LOC120102154 | | 4 | 38641635 | 38646263 | Rat | n/a | Region | gene |
| 936 | 41011912 | LOC120102753 | U2 spliceosomal RNA | | 4 | 44186135 | 44186318 | Rat | n/a | Region | gene |
| 935 | 40976402 | LOC120102629 | small nucleolar RNA SNORA3/SNORA45 family | | 4 | 35969727 | 35969848 | Rat | n/a | Region | gene |
| 934 | 40982246 | LOC120102694 | small nucleolar RNA SNORA17 | | 4 | 39733941 | 39734060 | Rat | n/a | Region | gene |
| 933 | 41002968 | LOC120102235 | uncharacterized LOC120102235 | | 4 | 40119387 | 40123944 | Rat | n/a | Region | gene |
| 932 | 41248065 | LOC120102234 | uncharacterized LOC120102234 | | 4 | 38901948 | 38907419 | Rat | n/a | Region | gene |
| 931 | 41319059 | LOC120102653 | small nucleolar RNA SNORA48 | | 4 | 37484690 | 37484833 | Rat | n/a | Region | gene |
| 930 | 41065803 | LOC120102155 | uncharacterized LOC120102155 | | 4 | 41988832 | 41995216 | Rat | n/a | Region | gene |
| 929 | 41017590 | Rnu6-210 | RNA, U6 small nuclear 210 | | 4 | 42721631 | 42721733 | Rat | n/a | Region | gene |