| 1000 | 2322 | Cdh6 | cadherin 6 | | 2 | 62079139 | 62225298 | Rat | n/a | Region | gene |
| 999 | 619958 | Pdzd2 | PDZ domain containing 2 | | 2 | 61384614 | 61770516 | Rat | n/a | Region | gene |
| 998 | 619741 | Cdh10 | cadherin 10 | | 2 | 68628623 | 68850995 | Rat | n/a | Region | gene |
| 997 | 3196 | Npr3 | natriuretic peptide receptor 3 | | 2 | 60865483 | 60933432 | Rat | n/a | Region | gene |
| 996 | 3407 | Prlr | prolactin receptor | | 2 | 59134147 | 59324719 | Rat | n/a | Region | gene |
| 995 | 621226 | Golph3 | golgi phosphoprotein 3 | | 2 | 61348030 | 61376051 | Rat | n/a | Region | gene |
| 994 | 620450 | Spef2 | sperm flagellar 2 | | 2 | 58512489 | 58694718 | Rat | n/a | Region | gene |
| 993 | 621582 | Sub1 | SUB1 regulator of transcription | | 2 | 61005646 | 61020486 | Rat | n/a | Region | gene |
| 992 | 621729 | Dnajc21 | DnaJ heat shock protein family (Hsp40) member C21 | | 2 | 59419507 | 59446746 | Rat | n/a | Region | gene |
| 991 | 621767 | Agxt2 | alanine-glyoxylate aminotransferase 2 | | 2 | 59336252 | 59377664 | Rat | n/a | Region | gene |
| 990 | 3048 | Amacr | alpha-methylacyl-CoA racemase | | 2 | 59946158 | 59958255 | Rat | n/a | Region | gene |
| 989 | 1306809 | Nadk2 | NAD kinase 2, mitochondrial | | 2 | 58117674 | 58159815 | Rat | n/a | Region | gene |
| 988 | 1305010 | C1qtnf3 | C1q and TNF related 3 | | 2 | 59917099 | 59939519 | Rat | n/a | Region | gene |
| 987 | 621491 | Basp1 | brain abundant, membrane attached signal protein 1 | | 2 | 75816130 | 75863801 | Rat | n/a | Region | gene |
| 986 | 1307323 | Adamts12 | ADAM metallopeptidase with thrombospondin type 1 motif, 12 | | 2 | 60032873 | 60327629 | Rat | n/a | Region | gene |
| 985 | 1308508 | Brix1 | biogenesis of ribosomes BRX1 | | 2 | 59450608 | 59461486 | Rat | n/a | Region | gene |
| 984 | 1306690 | Slc45a2 | solute carrier family 45, member 2 | | 2 | 59963599 | 59996408 | Rat | n/a | Region | gene |
| 983 | 1307193 | Myo10 | myosin X | | 2 | 76100989 | 76305619 | Rat | n/a | Region | gene |
| 982 | 3698 | Slc1a3 | solute carrier family 1 member 3 | | 2 | 57755495 | 57830605 | Rat | n/a | Region | gene |
| 981 | 1309146 | Zfp622 | zinc finger protein 622 | | 2 | 76479605 | 76494405 | Rat | n/a | Region | gene |
| 980 | 1309776 | Il7r | interleukin 7 receptor | | 2 | 58452393 | 58477757 | Rat | n/a | Region | gene |
| 979 | 1311550 | Rxfp3 | relaxin family peptide receptor 3 | | 2 | 60003256 | 60004686 | Rat | n/a | Region | gene |
| 978 | 1307626 | Drosha | drosha ribonuclease III | | 2 | 61864886 | 61976688 | Rat | n/a | Region | gene |
| 977 | 1311890 | Zfr | zinc finger RNA binding protein | | 2 | 61137611 | 61200322 | Rat | n/a | Region | gene |
| 976 | 1305942 | Rai14 | retinoic acid induced 14 | | 2 | 59546284 | 59682687 | Rat | n/a | Region | gene |
| 975 | 1307559 | Ranbp3l | RAN binding protein 3-like | | 2 | 58057887 | 58113158 | Rat | n/a | Region | gene |
| 974 | 1306496 | Rad1 | RAD1 checkpoint DNA exonuclease | | 2 | 59461597 | 59469707 | Rat | n/a | Region | gene |
| 973 | 1306502 | C2h5orf22 | similar to human chromosome 5 open reading frame 22 | | 2 | 61848790 | 61864762 | Rat | n/a | Region | gene |
| 972 | 1305430 | Cdh18 | cadherin 18 | | 2 | 72818076 | 73820144 | Rat | n/a | Region | gene |
| 971 | 1308776 | Capsl | calcyphosine-like | | 2 | 58394995 | 58425527 | Rat | n/a | Region | gene |
| 970 | 1308343 | Cdh9 | cadherin 9 | | 2 | 66280422 | 66367121 | Rat | n/a | Region | gene |
| 969 | 1307902 | Mtmr12 | myotubularin related protein 12 | | 2 | 61223714 | 61293270 | Rat | n/a | Region | gene |
| 968 | 1564928 | Ttc23l | tetratricopeptide repeat domain 23-like | | 2 | 59476666 | 59538313 | Rat | n/a | Region | gene |
| 967 | 1563920 | Lmbrd2 | LMBR1 domain containing 2 | | 2 | 58189558 | 58251565 | Rat | n/a | Region | gene |
| 966 | 1562936 | Hsp90ab1-ps6 | heat shock protein 90 alpha family class B member 1, pseudogene 6 | | 2 | 72125251 | 72129162 | Rat | n/a | Region | gene |
| 965 | 1565003 | Retreg1 | reticulophagy regulator 1 | | 2 | 76335609 | 76474817 | Rat | n/a | Region | gene |
| 964 | 1564125 | Cln5l1 | CLN5, intracellular trafficking protein like 1 | | 2 | 65893495 | 65902741 | Rat | n/a | Region | gene |
| 963 | 1562456 | Skp2 | S-phase kinase associated protein 2 | | 2 | 58161226 | 58189293 | Rat | n/a | Region | gene |
| 962 | 1561906 | RGD1561906 | similar to RIKEN cDNA 4930430F08 | | 2 | 72984388 | 72986671 | Rat | n/a | Region | gene |
| 961 | 1585807 | Knop1-ps1 | lysine-rich nucleolar protein 1, pseudogene 1 | | 2 | 65670908 | 65672736 | Rat | n/a | Region | gene |
| 960 | 1583285 | Hspd1-ps25 | heat shock protein family D (Hsp60) member 1, pseudogene 25 | | 2 | 74609750 | 74613329 | Rat | n/a | Region | gene |
| 959 | 1566350 | Cdh12 | cadherin 12 | | 2 | 70474679 | 71705369 | Rat | n/a | Region | gene |
| 958 | 1564365 | Ugt3a1 | UDP glycosyltransferase family 3 member A1 | | 2 | 58327058 | 58350186 | Rat | n/a | Region | gene |
| 957 | 1589753 | Cwc15-ps3 | CWC15 spliceosome-associated protein, pseudogene 3 | | 2 | 76016643 | 76017442 | Rat | n/a | Region | gene |
| 956 | 1592966 | Setd3-ps2 | SET domain containing 3, actin histidine methyltransferase, pseudogene 2 | | 2 | 60452630 | 60453393 | Rat | n/a | Region | gene |
| 955 | 1586190 | Ube2r2-ps1 | ubiquitin-conjugating enzyme E2R 2, pseudogene 1 | | 2 | 69552100 | 69554245 | Rat | n/a | Region | gene |
| 954 | 1583619 | Rps2-ps9 | ribosomal protein S2, pseudogene 9 | | 2 | 58101448 | 58102404 | Rat | n/a | Region | gene |
| 953 | 1359527 | Tars1 | threonyl-tRNA synthetase 1 | | 2 | 60368893 | 60387715 | Rat | n/a | Region | gene |
| 952 | 1583588 | Snap23-ps1 | synaptosome associated protein 23, pseudogene 1 | | 2 | 67604130 | 67609584 | Rat | n/a | Region | gene |
| 951 | 1593220 | Smarce1-ps11 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 11 | | 2 | 69414615 | 69417238 | Rat | n/a | Region | gene |
| 950 | 1596656 | Dda1-ps1 | DET1- and DDB1-associated 1, pseudogene 1 | | 2 | 73823939 | 73841395 | Rat | n/a | Region | gene |
| 949 | 1594163 | Dbi-ps2 | diazepam binding inhibitor, acyl-CoA binding protein, pseudogene 2 | | 2 | 60669968 | 60670245 | Rat | n/a | Region | gene |
| 948 | 1596810 | Ugt3a2-ps2 | UDP glycosyltransferase 3 family, polypeptide A2, pseudogene 2 | | 2 | 58314912 | 58327069 | Rat | n/a | Region | gene |
| 947 | 2322932 | Ubap2-ps1 | ubiquitin-associated protein 2, pseudogene 1 | | 2 | 66007542 | 66009900 | Rat | n/a | Region | gene |
| 946 | 2323466 | Riox2-ps3 | ribosomal oxygenase 2, pseudogene 3 | | 2 | 63936387 | 63937165 | Rat | n/a | Region | gene |
| 945 | 2323519 | Oip5-ps1 | Opa interacting protein 5, pseudogene 1 | | 2 | 63592233 | 63595295 | Rat | n/a | Region | gene |
| 944 | 2323951 | Hmgn2l2 | high mobility group nucleosomal binding domain 2 like 2 | | 2 | 57618690 | 57618983 | Rat | n/a | Region | gene |
| 943 | 2324086 | Rps12-ps3 | ribosomal protein S12, pseudogene | | 2 | 57615079 | 57615691 | Rat | n/a | Region | gene |
| 942 | 2324713 | Ftl1-ps14 | ferritin light chain 1, pseudogene 14 | | 2 | 61543563 | 61544476 | Rat | n/a | Region | gene |
| 941 | 6492359 | Klra5-ps1 | killer cell lectin-like receptor, subfamily A, member 5, pseudogene 1 | | 2 | 64212672 | 64217862 | Rat | n/a | Region | gene |
| 940 | 6494071 | Hnrnpm-ps1 | heterogeneous nuclear ribonucleoprotein M, pseudogene 1 | | 2 | 76498780 | 76500974 | Rat | n/a | Region | gene |
| 939 | 6504200 | LOC100909396 | uncharacterized LOC100909396 | | 2 | 61828096 | 61830209 | Rat | n/a | Region | gene |
| 938 | 7523639 | LOC102554929 | uncharacterized LOC102554929 | | 2 | 75101029 | 75109556 | Rat | n/a | Region | gene |
| 937 | 7505957 | LOC102553625 | uncharacterized LOC102553625 | | 2 | 68778890 | 68939928 | Rat | n/a | Region | gene |
| 936 | 7503607 | Mrpl40-ps1 | mitochondrial ribosomal protein L40, pseudogene 1 | | 2 | 59469857 | 59471850 | Rat | n/a | Region | gene |
| 935 | 7662910 | LOC102552232 | uncharacterized LOC102552232 | | 2 | 65767166 | 65819676 | Rat | n/a | Region | gene |
| 934 | 7662935 | LOC102553734 | uncharacterized LOC102553734 | | 2 | 68980294 | 69020038 | Rat | n/a | Region | gene |
| 933 | 7655727 | LOC102554147 | uncharacterized LOC102554147 | | 2 | 72156681 | 72198344 | Rat | n/a | Region | gene |
| 932 | 41054385 | LOC120101168 | U6 spliceosomal RNA | | 2 | 61082240 | 61082346 | Rat | n/a | Region | gene |
| 931 | 7667725 | Hnrnpa1-ps52 | heterogeneous nuclear ribonucleoprotein A1, pseudogene 52 | | 2 | 73247330 | 73249760 | Rat | n/a | Region | gene |
| 930 | 9200405 | LOC103691481 | uncharacterized LOC103691481 | | 2 | 57701767 | 57704913 | Rat | n/a | Region | gene |
| 929 | 9387191 | LOC103691483 | uncharacterized LOC103691483 | | 2 | 59734291 | 59747359 | Rat | n/a | Region | gene |
| 928 | 9362373 | LOC103695100 | uncharacterized LOC103695100 | | 2 | 62073657 | 62085399 | Rat | n/a | Region | gene |
| 927 | 9429209 | LOC103691486 | uncharacterized LOC103691486 | | 2 | 74811489 | 74842763 | Rat | n/a | Region | gene |
| 926 | 11359058 | LOC108349967 | 60S ribosomal protein L7a pseudogene | | 2 | 76366254 | 76367092 | Rat | n/a | Region | gene |
| 925 | 11445903 | LOC108350231 | uncharacterized LOC108350231 | | 2 | 74810030 | 74811049 | Rat | n/a | Region | gene |
| 924 | 11453461 | LOC108350230 | glyceraldehyde-3-phosphate dehydrogenase pseudogene | | 2 | 62737166 | 62738204 | Rat | n/a | Region | gene |
| 923 | 11378090 | LOC108350229 | 60S ribosomal protein L17 pseudogene | | 2 | 59841726 | 59842316 | Rat | n/a | Region | gene |
| 922 | 11403233 | LOC108349968 | uncharacterized LOC108349968 | | 2 | 76324084 | 76333964 | Rat | n/a | Region | gene |
| 921 | 11382166 | LOC108349962 | uncharacterized LOC108349962 | | 2 | 57835442 | 57840143 | Rat | n/a | Region | gene |
| 920 | 11511747 | LOC108350170 | glyceraldehyde-3-phosphate dehydrogenase pseudogene | | 2 | 60847918 | 60848940 | Rat | n/a | Region | gene |
| 919 | 11493630 | LOC108350171 | 60S ribosomal protein L7a pseudogene | | 2 | 62424328 | 62430752 | Rat | n/a | Region | gene |
| 918 | 41111255 | LOC120100737 | E3 SUMO-protein ligase KIAA1586-like | | 2 | 58532080 | 58540473 | Rat | n/a | Region | gene |
| 917 | 41276753 | LOC120100740 | uncharacterized LOC120100740 | | 2 | 59601221 | 59605292 | Rat | n/a | Region | gene |
| 916 | 41250842 | LOC120100745 | uncharacterized LOC120100745 | | 2 | 68539323 | 68628612 | Rat | n/a | Region | gene |
| 915 | 41324318 | LOC120100741 | uncharacterized LOC120100741 | | 2 | 60016482 | 60032748 | Rat | n/a | Region | gene |
| 914 | 41357925 | LOC120100998 | 60S ribosomal protein L6-like | | 2 | 68130984 | 68132284 | Rat | n/a | Region | gene |
| 913 | 41384167 | Ube2n-ps8 | ubiquitin-conjugating enzyme E2N, pseudogene 8 | | 2 | 69771825 | 69772236 | Rat | n/a | Region | gene |
| 912 | 41206868 | Gapdh-ps84 | Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 84 | | 2 | 75333031 | 75333975 | Rat | n/a | Region | gene |
| 911 | 41207236 | LOC120100736 | uncharacterized LOC120100736 | | 2 | 58109977 | 58118986 | Rat | n/a | Region | gene |
| 910 | 41287396 | Trnav-aac30 | transfer RNA valine (anticodon AAC) 30 | | 2 | 72842427 | 72842507 | Rat | n/a | Region | gene |
| 909 | 41178470 | LOC120100559 | uncharacterized LOC120100559 | | 2 | 58778662 | 58796834 | Rat | n/a | Region | gene |
| 908 | 41123498 | LOC120101245 | small nucleolar RNA SNORA44 | | 2 | 70446607 | 70446735 | Rat | n/a | Region | gene |
| 907 | 41180045 | LOC120101302 | small nucleolar RNA SNORA17 | | 2 | 73474966 | 73475097 | Rat | n/a | Region | gene |
| 906 | 41191856 | LOC120101085 | uncharacterized LOC120101085 | | 2 | 61020488 | 61021424 | Rat | n/a | Region | gene |
| 905 | 41397082 | LOC120100738 | uncharacterized LOC120100738 | | 2 | 58626293 | 58669887 | Rat | n/a | Region | gene |
| 904 | 41102832 | LOC120101346 | small nucleolar RNA SNORA17 | | 2 | 70942410 | 70942533 | Rat | n/a | Region | gene |
| 903 | 41127911 | Nono-ps5 | non-POU domain containing, octamer-binding, pseudogene 5 | | 2 | 58758328 | 58760040 | Rat | n/a | Region | gene |
| 902 | 41184907 | LOC120101260 | small nucleolar RNA SNORA48 | | 2 | 59466980 | 59467107 | Rat | n/a | Region | gene |
| 901 | 41196986 | LOC120101348 | small nucleolar RNA SNORA17 | | 2 | 65160631 | 65160712 | Rat | n/a | Region | gene |
| 900 | 41403201 | LOC120101087 | uncharacterized LOC120101087 | | 2 | 70508930 | 70511875 | Rat | n/a | Region | gene |
| 899 | 41231663 | Dpp3-ps3 | dipeptidyl peptidase 3, pseudogene 2 | | 2 | 64297593 | 64432049 | Rat | n/a | Region | gene |
| 898 | 41232314 | Rpl13-ps13 | ribosomal protein L13, pseudogene 13 | | 2 | 64595737 | 64596270 | Rat | n/a | Region | gene |
| 897 | 41232980 | LOC120100748 | uncharacterized LOC120100748 | | 2 | 75371258 | 75412938 | Rat | n/a | Region | gene |
| 896 | 40934801 | Dpy30-ps1 | dpy-30 histone methyltransferase complex regulatory subunit, pseudogene 1 | | 2 | 59522638 | 59526672 | Rat | n/a | Region | gene |
| 895 | 40962450 | LOC120101086 | uncharacterized LOC120101086 | | 2 | 61324070 | 61330556 | Rat | n/a | Region | gene |
| 894 | 40994990 | LOC120100997 | protein crumbs homolog 3-like | | 2 | 68000738 | 68003782 | Rat | n/a | Region | gene |
| 893 | 40995943 | LOC120100742 | uncharacterized LOC120100742 | | 2 | 65587937 | 65606771 | Rat | n/a | Region | gene |
| 892 | 41024443 | LOC120101173 | U6 spliceosomal RNA | | 2 | 62806517 | 62806619 | Rat | n/a | Region | gene |
| 891 | 41135571 | LOC120100560 | uncharacterized LOC120100560 | | 2 | 69020094 | 69020818 | Rat | n/a | Region | gene |
| 890 | 41335676 | Rbbp9-ps1 | RB binding protein 9, serine hydrolase, pseudogene 1 | | 2 | 68677002 | 68677554 | Rat | n/a | Region | gene |
| 889 | 41315512 | Fus-ps4 | FUS RNA binding protein, pseudogene 4 | | 2 | 74139382 | 74141230 | Rat | n/a | Region | gene |
| 888 | 41337724 | LOC120100746 | uncharacterized LOC120100746 | | 2 | 68650856 | 68670949 | Rat | n/a | Region | gene |
| 887 | 41066036 | LOC120101289 | small nucleolar RNA SNORA17 | | 2 | 60340441 | 60340572 | Rat | n/a | Region | gene |
| 886 | 41237332 | Rnu1-24 | RNA, U1 small nuclear 24 | | 2 | 74260848 | 74261011 | Rat | n/a | Region | gene |
| 885 | 41241035 | Ugt3a2-ps1 | UDP glycosyltransferase 3 family, polypeptide A2, pseudogene 1 | | 2 | 58385714 | 58389680 | Rat | n/a | Region | gene |