| 1000 | 70912 | P2ry14 | purinergic receptor P2Y14 | | 2 | 143372697 | 143413213 | Rat | n/a | Region | gene |
| 999 | 628779 | Clrn1 | clarin 1 | | 2 | 143084030 | 143130948 | Rat | n/a | Region | gene |
| 998 | 620283 | Foxo1 | forkhead box O1 | | 2 | 136312168 | 136390603 | Rat | n/a | Region | gene |
| 997 | 620790 | Serp1 | stress-associated endoplasmic reticulum protein 1 | | 2 | 142757254 | 142761243 | Rat | n/a | Region | gene |
| 996 | 621784 | Tm4sf4 | transmembrane 4 L six family member 4 | | 2 | 141570321 | 141621263 | Rat | n/a | Region | gene |
| 995 | 735030 | Igsf10 | immunoglobulin superfamily, member 10 | | 2 | 143575710 | 143605044 | Rat | n/a | Region | gene |
| 994 | 621681 | P2ry12 | purinergic receptor P2Y12 | | 2 | 143481468 | 143523340 | Rat | n/a | Region | gene |
| 993 | 620778 | Siah2 | siah E3 ubiquitin protein ligase 2 | | 2 | 142913924 | 142931752 | Rat | n/a | Region | gene |
| 992 | 621826 | Pfn2 | profilin 2 | | 2 | 142067102 | 142072938 | Rat | n/a | Region | gene |
| 991 | 621276 | Trpc4 | transient receptor potential cation channel, subfamily C, member 4 | | 2 | 138307676 | 138476856 | Rat | n/a | Region | gene |
| 990 | 1307812 | Supt20h | SPT20 homolog, SAGA complex component | | 2 | 138897316 | 138930493 | Rat | n/a | Region | gene |
| 989 | 68437 | Dclk1 | doublecortin-like kinase 1 | | 2 | 139417234 | 139710956 | Rat | n/a | Region | gene |
| 988 | 1304890 | Ufm1 | ubiquitin-fold modifier 1 | | 2 | 137969476 | 137977620 | Rat | n/a | Region | gene |
| 987 | 71004 | Smad9 | SMAD family member 9 | | 2 | 138956326 | 139006315 | Rat | n/a | Region | gene |
| 986 | 1307595 | Erhl1 | ERH, mRNA splicing and mitosis factor like 1 | | 2 | 132570276 | 132573582 | Rat | n/a | Region | gene |
| 985 | 1305900 | Spart | spartin | | 2 | 139292630 | 139319248 | Rat | n/a | Region | gene |
| 984 | 1305870 | Pcdh18 | protocadherin 18 | | 2 | 133831996 | 133845992 | Rat | n/a | Region | gene |
| 983 | 1303283 | Cog6 | component of oligomeric golgi complex 6 | | 2 | 137062127 | 137099176 | Rat | n/a | Region | gene |
| 982 | 1311090 | Stoml3 | stomatin like 3 | | 2 | 137572691 | 137582402 | Rat | n/a | Region | gene |
| 981 | 1560498 | Eif3i-ps1 | eukaryotic translation initiation factor 3, subunit I, pseudogene 1 | | 2 | 140669273 | 140670304 | Rat | n/a | Region | gene |
| 980 | 1309275 | Slc7a11 | solute carrier family 7 member 11 | | 2 | 134382002 | 134517622 | Rat | n/a | Region | gene |
| 979 | 1310984 | Naa15 | N(alpha)-acetyltransferase 15, NatA auxiliary subunit | | 2 | 135458018 | 135520756 | Rat | n/a | Region | gene |
| 978 | 1308353 | Rab33b | RAB33B, member RAS oncogene family | | 2 | 135528116 | 135538719 | Rat | n/a | Region | gene |
| 977 | 1310639 | Ccna1 | cyclin A1 | | 2 | 139231738 | 139278066 | Rat | n/a | Region | gene |
| 976 | 1306169 | Exosc8 | exosome component 8 | | 2 | 138930405 | 138937009 | Rat | n/a | Region | gene |
| 975 | 1308900 | Alg5 | ALG5, dolichyl-phosphate beta-glucosyltransferase | | 2 | 138936998 | 138951228 | Rat | n/a | Region | gene |
| 974 | 1308177 | Maml3 | mastermind-like transcriptional coactivator 3 | | 2 | 135720431 | 136137829 | Rat | n/a | Region | gene |
| 973 | 1309403 | Proser1 | proline and serine rich 1 | | 2 | 137542378 | 137561767 | Rat | n/a | Region | gene |
| 972 | 1307852 | Gpr87 | G protein-coupled receptor 87 | | 2 | 143439741 | 143440901 | Rat | n/a | Region | gene |
| 971 | 1309652 | Tm4sf1 | transmembrane 4 L six family member 1 | | 2 | 141456950 | 141466146 | Rat | n/a | Region | gene |
| 970 | 1305285 | Postn | periostin | | 2 | 138527714 | 138559098 | Rat | n/a | Region | gene |
| 969 | 1310585 | Elf2 | E74 like ETS transcription factor 2 | | 2 | 135292291 | 135385942 | Rat | n/a | Region | gene |
| 968 | 1563943 | Mcm4-ps1 | minichromosome maintenance complex component 4, pseudogene 1 | | 2 | 141550579 | 141554296 | Rat | n/a | Region | gene |
| 967 | 1564472 | Rexo1l1-ps1 | REX1, RNA exonuclease 1 homolog-like 1, pseudogene 1 | | 2 | 138834049 | 138838838 | Rat | n/a | Region | gene |
| 966 | 1311218 | Mgst2 | microsomal glutathione S-transferase 2 | | 2 | 135679524 | 135715828 | Rat | n/a | Region | gene |
| 965 | 1559451 | Erich6 | glutamate-rich 6 | | 2 | 142851905 | 142878010 | Rat | n/a | Region | gene |
| 964 | 1559609 | Wwtr1 | WW domain containing transcription regulator 1 | | 2 | 141651159 | 141766919 | Rat | n/a | Region | gene |
| 963 | 1359128 | Selenot | selenoprotein T | | 2 | 142804387 | 142821438 | Rat | n/a | Region | gene |
| 962 | 1560177 | Lhfpl6 | LHFPL tetraspan subfamily member 6 | | 2 | 137126485 | 137324442 | Rat | n/a | Region | gene |
| 961 | 1359174 | Tgap1l5 | GTPase activating protein testicular GAP1 like 5 | | 2 | 133471326 | 133509594 | Rat | n/a | Region | gene |
| 960 | 1302941 | P2ry13 | purinergic receptor P2Y13 | | 2 | 143470437 | 143476360 | Rat | n/a | Region | gene |
| 959 | 1565351 | Rfxap | regulatory factor X-associated protein | | 2 | 139008052 | 139012235 | Rat | n/a | Region | gene |
| 958 | 1566235 | Rpl36al-ps1 | ribosomal protein L36A, pseudogene 1 | | 2 | 141892707 | 141893102 | Rat | n/a | Region | gene |
| 957 | 1585271 | Gpr171 | G protein-coupled receptor 171 | | 2 | 143360402 | 143365494 | Rat | n/a | Region | gene |
| 956 | 1564926 | Tgap1l6 | GTPase activating protein testicular GAP1 like 6 | | 2 | 131750076 | 131797706 | Rat | n/a | Region | gene |
| 955 | 1587573 | Rpl18a-ps6 | ribosomal protein L18A, pseudogene 6 | | 2 | 134326599 | 134329443 | Rat | n/a | Region | gene |
| 954 | 1565414 | Nhlrc3 | NHL repeat containing 3 | | 2 | 137527843 | 137542258 | Rat | n/a | Region | gene |
| 953 | 1565811 | Pcdh10 | protocadherin 10 | | 2 | 128617212 | 128683354 | Rat | n/a | Region | gene |
| 952 | 1563562 | Tgap1l11 | GTPase activating protein testicular GAP1 like 11 | | 2 | 131029791 | 131092039 | Rat | n/a | Region | gene |
| 951 | 1562629 | Nbea | neurobeachin | | 2 | 139780021 | 140338639 | Rat | n/a | Region | gene |
| 950 | 1566012 | Frem2 | FRAS1 related extracellular matrix 2 | | 2 | 137602784 | 137740785 | Rat | n/a | Region | gene |
| 949 | 1588592 | Prdx1-ps8 | peroxiredoxin 1, pseudogene 8 | | 2 | 137826256 | 137826912 | Rat | n/a | Region | gene |
| 948 | 1586346 | Setd7 | SET domain containing 7, histone lysine methyltransferase | | 2 | 135562683 | 135605468 | Rat | n/a | Region | gene |
| 947 | 1589577 | Sohlh2 | spermatogenesis and oogenesis specific basic helix-loop-helix 2 | | 2 | 139362246 | 139384700 | Rat | n/a | Region | gene |
| 946 | 1586362 | Ndufc1 | NADH:ubiquinone oxidoreductase subunit C1 | | 2 | 135447067 | 135450950 | Rat | n/a | Region | gene |
| 945 | 1586369 | Mgarp | mitochondria-localized glutamic acid-rich protein | | 2 | 135431283 | 135439425 | Rat | n/a | Region | gene |
| 944 | 1589984 | Mab21l1 | mab-21 like 1 | | 2 | 139943496 | 139945885 | Rat | n/a | Region | gene |
| 943 | 1587344 | Noct | nocturnin | | 2 | 135271189 | 135291407 | Rat | n/a | Region | gene |
| 942 | 1587345 | Hspa8-ps18 | heat shock protein family A (Hsp70) member 8, pseudogene 18 | | 2 | 129109508 | 129111050 | Rat | n/a | Region | gene |
| 941 | 1590821 | Dusp14l1 | dual specificity phosphatase 14-like 1 | | 2 | 138738130 | 138739473 | Rat | n/a | Region | gene |
| 940 | 1591091 | Dmtf1-ps1 | cyclin D binding myb-like transcription factor 1, pseudogene 1 | | 2 | 129668961 | 129671126 | Rat | n/a | Region | gene |
| 939 | 1593169 | Tsc22d2 | TSC22 domain family, member 2 | | 2 | 142646778 | 142697977 | Rat | n/a | Region | gene |
| 938 | 1593170 | Ccdc169 | coiled-coil domain containing 169 | | 2 | 139321644 | 139351161 | Rat | n/a | Region | gene |
| 937 | 1592212 | Med12l | mediator complex subunit 12L | | 2 | 143253048 | 143576507 | Rat | n/a | Region | gene |
| 936 | 1592323 | Riox2-ps6 | ribosomal oxygenase 2, pseudogene 6 | | 2 | 128448551 | 128451089 | Rat | n/a | Region | gene |
| 935 | 1589591 | Eif2a | eukaryotic translation initiation factor 2A | | 2 | 142761303 | 142794767 | Rat | n/a | Region | gene |
| 934 | 1588810 | Commd2 | COMM domain containing 2 | | 2 | 141848661 | 141852907 | Rat | n/a | Region | gene |
| 933 | 1559517 | Pabpc4l | poly(A) binding protein, cytoplasmic 4-like | | 2 | 129807755 | 129809745 | Rat | n/a | Region | gene |
| 932 | 1589949 | Tgap1l9 | GTPase activating protein testicular GAP1 like 9 | | 2 | 131691178 | 131736078 | Rat | n/a | Region | gene |
| 931 | 1589926 | Phb1-ps17 | prohibitin 1, pseudogene 17 | | 2 | 131812324 | 131822672 | Rat | n/a | Region | gene |
| 930 | 1588275 | Eif4e-ps3 | eukaryotic translation initiation factor 4E, pseudogene 3 | | 2 | 136283646 | 136284398 | Rat | n/a | Region | gene |
| 929 | 1593206 | Aldoa-ps6 | aldolase, fructose-bisphosphate A, pseudogene 6 | | 2 | 128740774 | 128742056 | Rat | n/a | Region | gene |
| 928 | 1597355 | Sertm1 | serine-rich and transmembrane domain containing 1 | | 2 | 139086905 | 139106528 | Rat | n/a | Region | gene |
| 927 | 1594062 | Rnf13 | ring finger protein 13 | | 2 | 141927887 | 142061801 | Rat | n/a | Region | gene |
| 926 | 1595598 | Tgap1l8 | GTPase activating protein testicular GAP1 like 8 | | 2 | 131215856 | 131280563 | Rat | n/a | Region | gene |
| 925 | 1593204 | Hspa8-ps8 | heat shock protein family A (Hsp70) member 8, pseudogene 8 | | 2 | 133005896 | 133007805 | Rat | n/a | Region | gene |
| 924 | 1593205 | Hdac1-ps19 | Histone deacetylase 1, pseudogene 19 | | 2 | 132478743 | 132480642 | Rat | n/a | Region | gene |
| 923 | 2319355 | Adrm1-ps1 | ADRM1 26S proteasome ubiquitin receptor, pseudogene 1 | | 2 | 134333526 | 134334743 | Rat | n/a | Region | gene |
| 922 | 2318910 | C1h15orf40-ps1 | similar to human chromosome 15 open reading frame 40, pseudogene 1 | | 2 | 137775820 | 137776319 | Rat | n/a | Region | gene |
| 921 | 2319549 | Samd3-ps1 | sterile alpha motif domain containing 3, pseudogene 1 | | 2 | 134161363 | 134162203 | Rat | n/a | Region | gene |
| 920 | 2320352 | Rps13-ps8 | ribosomal protein S13, pseudogene 8 | | 2 | 142636554 | 142636927 | Rat | n/a | Region | gene |
| 919 | 2321502 | Ewsr1-ps1 | EWS RNA-binding protein 1 | | 2 | 127988248 | 127990520 | Rat | n/a | Region | gene |
| 918 | 2321698 | Pacrgl-ps1 | parkin coregulated like, pseudogene 1 | | 2 | 133152880 | 133154412 | Rat | n/a | Region | gene |
| 917 | 2321898 | Ran-ps3 | RAN, member RAS oncogene family, pseudogene 3 | | 2 | 128705723 | 128707749 | Rat | n/a | Region | gene |
| 916 | 2320491 | Ankub1 | ankyrin repeat and ubiquitin domain containing 1 | | 2 | 141857623 | 141894624 | Rat | n/a | Region | gene |
| 915 | 6503572 | Rpl12-ps2 | ribosomal protein L12, pseudogene 2 | | 2 | 141784371 | 141785085 | Rat | n/a | Region | gene |
| 914 | 6500885 | Nono-ps2 | non-POU domain containing, octamer-binding, pseudogene 2 | | 2 | 142109424 | 142112044 | Rat | n/a | Region | gene |
| 913 | 6501036 | Kmt5al1 | lysine methyltransferase 5A like 1 | | 2 | 142289672 | 142292195 | Rat | n/a | Region | gene |
| 912 | 7507353 | Nsa2-ps23 | NSA2 ribosome biogenesis factor, pseudogene 23 | | 2 | 140781011 | 140781859 | Rat | n/a | Region | gene |
| 911 | 7516215 | Tgap1l12 | GTPase activating protein testicular GAP1 like 12 | | 2 | 131292205 | 131645662 | Rat | n/a | Region | gene |
| 910 | 7631535 | Nhp2-ps1 | NHP2 ribonucleoprotein, pseudogene 1 | | 2 | 137531853 | 137534519 | Rat | n/a | Region | gene |
| 909 | 7663391 | LOC102547111 | uncharacterized LOC102547111 | | 2 | 136942896 | 137033178 | Rat | n/a | Region | gene |
| 908 | 7664166 | LOC102552778 | uncharacterized LOC102552778 | | 2 | 139990888 | 139994618 | Rat | n/a | Region | gene |
| 907 | 7623948 | LOC102549721 | uncharacterized LOC102549721 | | 2 | 138182296 | 138232451 | Rat | n/a | Region | gene |
| 906 | 7642297 | LOC102550446 | rho GTPase-activating protein 20-like | | 2 | 133296630 | 133407312 | Rat | n/a | Region | gene |
| 905 | 7581938 | LOC102552324 | uncharacterized LOC102552324 | | 2 | 139569183 | 139577314 | Rat | n/a | Region | gene |
| 904 | 7608249 | LOC102546847 | uncharacterized LOC102546847 | | 2 | 136685343 | 136695240 | Rat | n/a | Region | gene |
| 903 | 7726710 | LOC102552834 | uncharacterized LOC102552834 | | 2 | 139906425 | 139915076 | Rat | n/a | Region | gene |
| 902 | 9101027 | Rpl31l11 | ribosomal protein L31 like 11 | | 2 | 132272163 | 132272636 | Rat | n/a | Region | gene |
| 901 | 9191676 | LOC103691547 | histone H3-like | | 2 | 129998520 | 129998912 | Rat | n/a | Region | gene |
| 900 | 9269847 | LOC103695119 | 60S ribosomal protein L34 pseudogene | | 2 | 142026133 | 142030412 | Rat | n/a | Region | gene |
| 899 | 9251686 | Tgap1l3 | GTPase activating protein testicular GAP1 like 3 | | 2 | 131121784 | 131190097 | Rat | n/a | Region | gene |
| 898 | 11368573 | LOC108350015 | uncharacterized LOC108350015 | | 2 | 141852931 | 141862943 | Rat | n/a | Region | gene |
| 897 | 11362385 | Mindy4b | MINDY family member 4B | | 2 | 143026685 | 143061966 | Rat | n/a | Region | gene |
| 896 | 11465045 | LOC108350247 | 60S ribosomal protein L35 pseudogene | | 2 | 132271714 | 132272066 | Rat | n/a | Region | gene |
| 895 | 11426711 | Trnap-ugg2 | transfer RNA proline (anticodon UGG) 2 | | 2 | 135401149 | 135401220 | Rat | n/a | Region | gene |
| 894 | 11385321 | LOC108350008 | 60S ribosomal protein L35a pseudogene | | 2 | 135531741 | 135532151 | Rat | n/a | Region | gene |
| 893 | 11386619 | LOC108350187 | 60S ribosomal protein L39 pseudogene | | 2 | 137421238 | 137421432 | Rat | n/a | Region | gene |
| 892 | 11380114 | Rpl7a-ps21 | ribosomal protein L7a, pseudogene 21 | | 2 | 143142439 | 143143338 | Rat | n/a | Region | gene |
| 891 | 11392116 | LOC108350009 | uncharacterized LOC108350009 | | 2 | 135662680 | 135667922 | Rat | n/a | Region | gene |
| 890 | 11483277 | Trnak-cuu5 | transfer RNA lysine (anticodon CUU) 5 | | 2 | 136753070 | 136753142 | Rat | n/a | Region | gene |
| 889 | 11486967 | Trnap-agg4 | transfer RNA proline (anticodon AGG) 4 | | 2 | 135402136 | 135402207 | Rat | n/a | Region | gene |
| 888 | 41379557 | LOC120100831 | uncharacterized LOC120100831 | | 2 | 143363352 | 143370752 | Rat | n/a | Region | gene |
| 887 | 41206294 | LOC120101267 | small nucleolar RNA SNORA48 | | 2 | 130780074 | 130780217 | Rat | n/a | Region | gene |
| 886 | 41091330 | LOC120100812 | uncharacterized LOC120100812 | | 2 | 128494120 | 128525138 | Rat | n/a | Region | gene |
| 885 | 41145339 | LOC120100824 | uncharacterized LOC120100824 | | 2 | 140835560 | 140873684 | Rat | n/a | Region | gene |
| 884 | 41092931 | LOC120093152 | rho GTPase-activating protein 20-like | | 2 | 133570229 | 133603645 | Rat | n/a | Region | gene |
| 883 | 41329676 | LOC120101218 | U7 small nuclear RNA | | 2 | 141562874 | 141562937 | Rat | n/a | Region | gene |
| 882 | 41392418 | LOC120101116 | U2 spliceosomal RNA | | 2 | 142505335 | 142505414 | Rat | n/a | Region | gene |
| 881 | 41179476 | LOC120101127 | U4 spliceosomal RNA | | 2 | 134528655 | 134528788 | Rat | n/a | Region | gene |
| 880 | 41343568 | LOC120100819 | uncharacterized LOC120100819 | | 2 | 137269261 | 137286537 | Rat | n/a | Region | gene |
| 879 | 41156453 | LOC120100828 | uncharacterized LOC120100828 | | 2 | 142177984 | 142189551 | Rat | n/a | Region | gene |
| 878 | 41396004 | LOC120101335 | small nucleolar RNA SNORA17 | | 2 | 130664190 | 130664323 | Rat | n/a | Region | gene |
| 877 | 41398125 | LOC120101148 | U6 spliceosomal RNA | | 2 | 139378366 | 139378472 | Rat | n/a | Region | gene |
| 876 | 41372747 | LOC120100818 | uncharacterized LOC120100818 | | 2 | 137032199 | 137034329 | Rat | n/a | Region | gene |
| 875 | 41164989 | LOC120101107 | U2 spliceosomal RNA | | 2 | 131736220 | 131736350 | Rat | n/a | Region | gene |
| 874 | 41233265 | LOC120100814 | rho GTPase-activating protein 20-like | | 2 | 133422096 | 133454718 | Rat | n/a | Region | gene |
| 873 | 40946467 | LOC120100827 | uncharacterized LOC120100827 | | 2 | 142355389 | 142413239 | Rat | n/a | Region | gene |
| 872 | 40975337 | LOC120100815 | rho GTPase-activating protein 20-like | | 2 | 133520135 | 133559812 | Rat | n/a | Region | gene |
| 871 | 40952217 | Trnaa-agc74 | transfer RNA alanine (anticodon AGC) 74 | | 2 | 138840829 | 138840903 | Rat | n/a | Region | gene |
| 870 | 40954669 | LOC120100816 | uncharacterized LOC120100816 | | 2 | 134801684 | 134810909 | Rat | n/a | Region | gene |
| 869 | 40977691 | LOC120101306 | small nucleolar RNA SNORA17 | | 2 | 134854326 | 134854445 | Rat | n/a | Region | gene |
| 868 | 40999832 | LOC120101356 | small nucleolar RNA SNORA17 | | 2 | 137598603 | 137598719 | Rat | n/a | Region | gene |
| 867 | 40936546 | LOC120100826 | uncharacterized LOC120100826 | | 2 | 142100003 | 142122325 | Rat | n/a | Region | gene |
| 866 | 40964933 | Trnap-agg40 | transfer RNA proline (anticodon AGG) 40 | | 2 | 142013652 | 142013733 | Rat | n/a | Region | gene |
| 865 | 40964986 | Trnaa-ggc | transfer RNA alanine (anticodon GGC) | | 2 | 138866655 | 138866735 | Rat | n/a | Region | gene |
| 864 | 40992880 | LOC120100820 | uncharacterized LOC120100820 | | 2 | 138991377 | 138999932 | Rat | n/a | Region | gene |
| 863 | 41237368 | LOC120101340 | small nucleolar RNA SNORA17 | | 2 | 140311336 | 140311463 | Rat | n/a | Region | gene |
| 862 | 41068108 | LOC120101285 | small nucleolar RNA SNORA17 | | 2 | 129578379 | 129578510 | Rat | n/a | Region | gene |
| 861 | 41307398 | LOC120100579 | uncharacterized LOC120100579 | | 2 | 130410255 | 130411375 | Rat | n/a | Region | gene |
| 860 | 41022771 | LOC120101343 | small nucleolar RNA SNORA17 | | 2 | 140617246 | 140617361 | Rat | n/a | Region | gene |