| 1000 | 61806 | Ecel1 | endothelin converting enzyme-like 1 | | 9 | 87819516 | 87829154 | Rat | n/a | Region | gene |
| 999 | 61801 | Htr2b | 5-hydroxytryptamine receptor 2B | | 9 | 86735793 | 86756638 | Rat | n/a | Region | gene |
| 998 | 61829 | Ptma | prothymosin alpha | | 9 | 87176251 | 87180333 | Rat | n/a | Region | gene |
| 997 | 61945 | Per2 | period circadian regulator 2 | | 9 | 92007289 | 92049551 | Rat | n/a | Region | gene |
| 996 | 3619 | Sag | S-antigen visual arrestin | | 9 | 88467797 | 88508821 | Rat | n/a | Region | gene |
| 995 | 2914 | Inpp5d | inositol polyphosphate-5-phosphatase D | | 9 | 88287680 | 88392748 | Rat | n/a | Region | gene |
| 994 | 2352 | Chrnd | cholinergic receptor nicotinic delta subunit | | 9 | 87862417 | 87870833 | Rat | n/a | Region | gene |
| 993 | 2354 | Chrng | cholinergic receptor nicotinic gamma subunit | | 9 | 87878085 | 87884193 | Rat | n/a | Region | gene |
| 992 | 620949 | Ugt1a6 | UDP glucuronosyltransferase family 1 member A6 | | 9 | 88747213 | 88808465 | Rat | n/a | Region | gene |
| 991 | 708474 | Ugt1a8 | UDP glucuronosyltransferase family 1 member A8 | | 9 | 88727094 | 88808465 | Rat | n/a | Region | gene |
| 990 | 620601 | Ackr3 | atypical chemokine receptor 3 | | 9 | 90799682 | 90811246 | Rat | n/a | Region | gene |
| 989 | 620219 | Sh3bp4 | SH3-domain binding protein 4 | | 9 | 89660156 | 89739163 | Rat | n/a | Region | gene |
| 988 | 708488 | Spp2 | secreted phosphoprotein 2 | | 9 | 89006858 | 89026676 | Rat | n/a | Region | gene |
| 987 | 620128 | Ilkap | ILK associated serine/threonine phosphatase | | 9 | 91966440 | 91988791 | Rat | n/a | Region | gene |
| 986 | 620950 | Ugt1a7c | UDP glucuronosyltransferase 1 family, polypeptide A7C | | 9 | 88739577 | 88808465 | Rat | n/a | Region | gene |
| 985 | 621661 | Kcnj13 | potassium inwardly-rectifying channel, subfamily J, member 13 | | 9 | 88063003 | 88071112 | Rat | n/a | Region | gene |
| 984 | 621669 | Psmd1 | proteasome 26S subunit, non-ATPase 1 | | 9 | 86709714 | 86785213 | Rat | n/a | Region | gene |
| 983 | 619867 | Nmur1 | neuromedin U receptor 1 | | 9 | 87033231 | 87038070 | Rat | n/a | Region | gene |
| 982 | 3153 | Ncl | nucleolin | | 9 | 86999588 | 87008112 | Rat | n/a | Region | gene |
| 981 | 3164 | Neu2 | neuraminidase 2 | | 9 | 88218494 | 88267356 | Rat | n/a | Region | gene |
| 980 | 620762 | Trpm8 | transient receptor potential cation channel, subfamily M, member 8 | | 9 | 88897039 | 88990167 | Rat | n/a | Region | gene |
| 979 | 61870 | Ramp1 | receptor activity modifying protein 1 | | 9 | 91765481 | 91816152 | Rat | n/a | Region | gene |
| 978 | 1305846 | Hjurp | Holliday junction recognition protein | | 9 | 88853379 | 88867730 | Rat | n/a | Region | gene |
| 977 | 1306918 | Cops7b | COP9 signalosome subunit 7B | | 9 | 87238132 | 87263967 | Rat | n/a | Region | gene |
| 976 | 620850 | Nppc | natriuretic peptide C | | 9 | 87320051 | 87324251 | Rat | n/a | Region | gene |
| 975 | 1305615 | Armc9 | armadillo repeat containing 9 | | 9 | 86802791 | 86928611 | Rat | n/a | Region | gene |
| 974 | 1306390 | Cab39 | calcium binding protein 39 | | 9 | 86463095 | 86524545 | Rat | n/a | Region | gene |
| 973 | 1306204 | Pde6d | phosphodiesterase 6D | | 9 | 87192989 | 87237979 | Rat | n/a | Region | gene |
| 972 | 1307608 | Ube2f | ubiquitin-conjugating enzyme E2F (putative) | | 9 | 91845975 | 91881145 | Rat | n/a | Region | gene |
| 971 | 2099 | Alpi | alkaline phosphatase, intestinal | | 9 | 87773411 | 87776877 | Rat | n/a | Region | gene |
| 970 | 727833 | Ugt1a9-ps | UDP glycosyltransferase 1 family, polypeptide A9, pseudogene | | 9 | 88713184 | 88714042 | Rat | n/a | Region | gene |
| 969 | 1307790 | Eif4e2 | eukaryotic translation initiation factor 4E family member 2 | | 9 | 87886126 | 87914470 | Rat | n/a | Region | gene |
| 968 | 3935 | Ugt1a1 | UDP glucuronosyltransferase family 1 member A1 | | 9 | 88801344 | 88808465 | Rat | n/a | Region | gene |
| 967 | 621866 | Gbx2 | gastrulation brain homeobox 2 | | 9 | 90509633 | 90512212 | Rat | n/a | Region | gene |
| 966 | 1310850 | Asb18 | ankyrin repeat and SOCS box-containing 18 | | 9 | 90531350 | 90595953 | Rat | n/a | Region | gene |
| 965 | 621650 | Akp3 | alkaline phosphatase 3, intestine, not Mn requiring | | 9 | 87804680 | 87808715 | Rat | n/a | Region | gene |
| 964 | 1312047 | Hes6 | hes family bHLH transcription factor 6 | | 9 | 92001849 | 92003562 | Rat | n/a | Region | gene |
| 963 | 1311447 | Snorc | secondary ossification center associated regulator of chondrocyte maturation | | 9 | 88140510 | 88145527 | Rat | n/a | Region | gene |
| 962 | 1549771 | Ugt1a9 | UDP glucuronosyltransferase family 1 member A9 | | 9 | 88696981 | 88808465 | Rat | n/a | Region | gene |
| 961 | 1310631 | Atg16l1 | autophagy related 16-like 1 | | 9 | 88420737 | 88457530 | Rat | n/a | Region | gene |
| 960 | 1309055 | Ngef | neuronal guanine nucleotide exchange factor | | 9 | 88146956 | 88244454 | Rat | n/a | Region | gene |
| 959 | 1309613 | Usp40 | ubiquitin specific peptidase 40 | | 9 | 88607920 | 88678940 | Rat | n/a | Region | gene |
| 958 | 1305311 | Iqca1 | IQ motif containing with AAA domain 1 | | 9 | 90626735 | 90742563 | Rat | n/a | Region | gene |
| 957 | 1308164 | Spata3 | spermatogenesis associated 3 | | 9 | 86660352 | 86672272 | Rat | n/a | Region | gene |
| 956 | 1308704 | Col6a3 | collagen type VI alpha 3 chain | | 9 | 91361578 | 91439434 | Rat | n/a | Region | gene |
| 955 | 1309244 | Agap1 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 | | 9 | 90039720 | 90475196 | Rat | n/a | Region | gene |
| 954 | 1309503 | Itm2c | integral membrane protein 2C | | 9 | 86545927 | 86559745 | Rat | n/a | Region | gene |
| 953 | 1311404 | Cops8 | COP9 signalosome subunit 8 | | 9 | 91207427 | 91217258 | Rat | n/a | Region | gene |
| 952 | 1310580 | B3gnt7 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 | | 9 | 86956220 | 86960171 | Rat | n/a | Region | gene |
| 951 | 1309644 | Klhl30 | kelch-like family member 30 | | 9 | 91942475 | 91952756 | Rat | n/a | Region | gene |
| 950 | 1561755 | Srp14l1 | signal recognition particle 14 like 1 | | 9 | 86645829 | 86649077 | Rat | n/a | Region | gene |
| 949 | 1563955 | Prss56 | serine protease 56 | | 9 | 87842806 | 87859978 | Rat | n/a | Region | gene |
| 948 | 1563309 | Dgkd | diacylglycerol kinase, delta | | 9 | 88516686 | 88607349 | Rat | n/a | Region | gene |
| 947 | 1562432 | Espnl | espin-like | | 9 | 91912038 | 91936803 | Rat | n/a | Region | gene |
| 946 | 1563917 | A630001G21Rikl | RIKEN cDNA A630001G21 gene like | | 9 | 86381777 | 86405385 | Rat | n/a | Region | gene |
| 945 | 1565687 | Mroh2a | maestro heat-like repeat family member 2A | | 9 | 88814515 | 88862346 | Rat | n/a | Region | gene |
| 944 | 1549741 | Ugt1a2 | UDP glucuronosyltransferase 1 family, polypeptide A2 | | 9 | 88791216 | 88808465 | Rat | n/a | Region | gene |
| 943 | 1549728 | Ugt1a3 | UDP glycosyltransferase 1 family, polypeptide A3 | | 9 | 88780328 | 88808465 | Rat | n/a | Region | gene |
| 942 | 1310733 | Mlph | melanophilin | | 9 | 91507410 | 91542984 | Rat | n/a | Region | gene |
| 941 | 628634 | Prlh | prolactin releasing hormone | | 9 | 91543128 | 91549022 | Rat | n/a | Region | gene |
| 940 | 1559828 | Gpr55 | G protein-coupled receptor 55 | | 9 | 86584906 | 86640601 | Rat | n/a | Region | gene |
| 939 | 1560168 | Dis3l2 | DIS3-like 3'-5' exoribonuclease 2 | | 9 | 87355409 | 87736616 | Rat | n/a | Region | gene |
| 938 | 1359548 | Lrrfip1 | LRR binding FLII interacting protein 1 | | 9 | 91592032 | 91720250 | Rat | n/a | Region | gene |
| 937 | 1359550 | Sp100 | SP100 nuclear antigen | | 9 | 86310990 | 86377036 | Rat | n/a | Region | gene |
| 936 | 1559565 | Efhd1 | EF-hand domain family, member D1 | | 9 | 87938259 | 87984917 | Rat | n/a | Region | gene |
| 935 | 1562478 | Rab17 | RAB17, member RAS oncogene family | | 9 | 91552924 | 91566759 | Rat | n/a | Region | gene |
| 934 | 1583637 | Rpl21-ps1 | ribosomal protein L21, pseudogene 1 | | 9 | 87635133 | 87635684 | Rat | n/a | Region | gene |
| 933 | 1566074 | Rbm44 | RNA binding motif protein 44 | | 9 | 91731153 | 91756783 | Rat | n/a | Region | gene |
| 932 | 1565945 | Rps10-ps8 | ribosomal protein S10, pseudogene 8 | | 9 | 86422162 | 86422790 | Rat | n/a | Region | gene |
| 931 | 1564629 | Tex44 | testis expressed 44 | | 9 | 87075684 | 87077102 | Rat | n/a | Region | gene |
| 930 | 1565100 | Alpg | alkaline phosphatase, germ cell | | 9 | 87748721 | 87761500 | Rat | n/a | Region | gene |
| 929 | 1359514 | Scly | selenocysteine lyase | | 9 | 91890269 | 91910947 | Rat | n/a | Region | gene |
| 928 | 1589685 | Arl4c | ADP ribosylation factor like GTPase 4C | | 9 | 89300335 | 89303770 | Rat | n/a | Region | gene |
| 927 | 1592977 | Ppid-ps21 | peptidylprolyl isomerase D, pseudogene 21 | | 9 | 88891682 | 88893091 | Rat | n/a | Region | gene |
| 926 | 1584688 | Erfe | erythroferrone | | 9 | 91956971 | 91964846 | Rat | n/a | Region | gene |
| 925 | 1583689 | Ugt1a5 | UDP glucuronosyltransferase family 1 member A5 | | 9 | 88762250 | 88808465 | Rat | n/a | Region | gene |
| 924 | 1598338 | Pkm-ps10 | pyruvate kinase M1/2, pseudogene 10 | | 9 | 91823472 | 91834122 | Rat | n/a | Region | gene |
| 923 | 1594329 | Ugt1a4-ps | UDP glycosyltransferase 1 family, polypeptide A4, pseudogene | | 9 | 88772587 | 88773555 | Rat | n/a | Region | gene |
| 922 | 1594215 | Dnajb3 | DnaJ heat shock protein family (Hsp40) member B3 | | 9 | 88795542 | 88796555 | Rat | n/a | Region | gene |
| 921 | 2318569 | C9h2orf72 | similar to human chromosome 2 open reading frame 72 | | 9 | 86691767 | 86699920 | Rat | n/a | Region | gene |
| 920 | 2318130 | Gigyf2 | GRB10 interacting GYF protein 2 | | 9 | 88001212 | 88127040 | Rat | n/a | Region | gene |
| 919 | 2322949 | Nsa2-ps1 | NSA2 ribosome biogenesis factor, pseudogene 1 | | 9 | 87590606 | 87591465 | Rat | n/a | Region | gene |
| 918 | 2325055 | Alpp | alkaline phosphatase, placental | | 9 | 87765846 | 87768606 | Rat | n/a | Region | gene |
| 917 | 6488392 | LOC100912214 | uncharacterized LOC100912214 | | 9 | 91994375 | 91996238 | Rat | n/a | Region | gene |
| 916 | 7663504 | LOC102554789 | uncharacterized LOC102554789 | | 9 | 90595971 | 90640971 | Rat | n/a | Region | gene |
| 915 | 7593803 | LOC102555145 | uncharacterized LOC102555145 | | 9 | 90974641 | 90981811 | Rat | n/a | Region | gene |
| 914 | 7548599 | LOC102554430 | uncharacterized LOC102554430 | | 9 | 89777240 | 89781278 | Rat | n/a | Region | gene |
| 913 | 7553846 | LOC102554187 | uncharacterized LOC102554187 | | 9 | 89064664 | 89104187 | Rat | n/a | Region | gene |
| 912 | 7705608 | LOC102555030 | uncharacterized LOC102555030 | | 9 | 90845531 | 90856417 | Rat | n/a | Region | gene |
| 911 | 7690483 | LOC102548542 | uncharacterized LOC102548542 | | 9 | 86890600 | 86956019 | Rat | n/a | Region | gene |
| 910 | 7737812 | LOC102554475 | uncharacterized LOC102554475 | | 9 | 89901821 | 89920445 | Rat | n/a | Region | gene |
| 909 | 7714518 | LOC102548729 | uncharacterized LOC102548729 | | 9 | 87093209 | 87102973 | Rat | n/a | Region | gene |
| 908 | 9102062 | LOC103690569 | uncharacterized LOC103690569 | | 9 | 89460992 | 89469978 | Rat | n/a | Region | gene |
| 907 | 9334462 | LOC103690562 | uncharacterized LOC103690562 | | 9 | 86409473 | 86421040 | Rat | n/a | Region | gene |
| 906 | 11424261 | Gapdh-ps25 | Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 25 | | 9 | 89525149 | 89526174 | Rat | n/a | Region | gene |
| 905 | 11512085 | LOC108351971 | uncharacterized LOC108351971 | | 9 | 88906854 | 88909792 | Rat | n/a | Region | gene |
| 904 | 11517988 | LOC108351970 | uncharacterized LOC108351970 | | 9 | 88748897 | 88759048 | Rat | n/a | Region | gene |
| 903 | 41138001 | LOC120094734 | uncharacterized LOC120094734 | | 9 | 87096476 | 87113703 | Rat | n/a | Region | gene |
| 902 | 41275851 | LOC120094738 | uncharacterized LOC120094738 | | 9 | 89311198 | 89324968 | Rat | n/a | Region | gene |
| 901 | 41139248 | LOC120094737 | uncharacterized LOC120094737 | | 9 | 88282136 | 88287642 | Rat | n/a | Region | gene |
| 900 | 41329502 | LOC120094860 | U6 spliceosomal RNA | | 9 | 87925492 | 87925595 | Rat | n/a | Region | gene |
| 899 | 41363602 | LOC120094871 | U6 spliceosomal RNA | | 9 | 87792436 | 87792530 | Rat | n/a | Region | gene |
| 898 | 41096162 | Trnav-aac33 | transfer RNA valine (anticodon AAC) 33 | | 9 | 88016705 | 88016779 | Rat | n/a | Region | gene |
| 897 | 41119897 | LOC120094730 | uncharacterized LOC120094730 | | 9 | 86648970 | 86663626 | Rat | n/a | Region | gene |
| 896 | 41178953 | LOC120094949 | small nucleolar RNA U13 | | 9 | 87190529 | 87190633 | Rat | n/a | Region | gene |
| 895 | 41153847 | Snord20 | small nucleolar RNA, C/D box 20 | | 9 | 87001068 | 87001147 | Rat | n/a | Region | gene |
| 894 | 41266300 | LOC120094731 | uncharacterized LOC120094731 | | 9 | 86685019 | 86707213 | Rat | n/a | Region | gene |
| 893 | 41155597 | LOC120094739 | uncharacterized LOC120094739 | | 9 | 89325222 | 89345530 | Rat | n/a | Region | gene |
| 892 | 41289198 | LOC120094894 | U1 spliceosomal RNA | | 9 | 86565505 | 86565670 | Rat | n/a | Region | gene |
| 891 | 41104869 | Scarna6 | small Cajal body-specific RNA 6 | | 9 | 88450584 | 88450846 | Rat | n/a | Region | gene |
| 890 | 41229829 | Scarna6l | small Cajal body-specific RNA 6 like | | 9 | 88442065 | 88442334 | Rat | n/a | Region | gene |
| 889 | 41232573 | LOC120094807 | uncharacterized LOC120094807 | | 9 | 90232717 | 90241118 | Rat | n/a | Region | gene |
| 888 | 41013737 | Snora75 | small nucleolar RNA, H/ACA box 75 | | 9 | 87000248 | 87000384 | Rat | n/a | Region | gene |
| 887 | 40983173 | LOC120094852 | uncharacterized LOC120094852 | | 9 | 89240129 | 89242768 | Rat | n/a | Region | gene |
| 886 | 40940351 | Snord82 | small nucleolar RNA, C/D box 82 | | 9 | 87004515 | 87004586 | Rat | n/a | Region | gene |
| 885 | 40940829 | Trnav-aac37 | transfer RNA valine (anticodon AAC) 37 | | 9 | 87216268 | 87216349 | Rat | n/a | Region | gene |
| 884 | 40967038 | LOC120094742 | uncharacterized LOC120094742 | | 9 | 90966320 | 90990369 | Rat | n/a | Region | gene |
| 883 | 40944180 | LOC120094914 | small nucleolar RNA SNORA17 | | 9 | 88991785 | 88991916 | Rat | n/a | Region | gene |
| 882 | 41055286 | Trnap-agg49 | transfer RNA proline (anticodon AGG) 49 | | 9 | 86931893 | 86931965 | Rat | n/a | Region | gene |
| 881 | 41056788 | LOC120094980 | U6 spliceosomal RNA | | 9 | 89788627 | 89788730 | Rat | n/a | Region | gene |
| 880 | 41225257 | LOC120094740 | uncharacterized LOC120094740 | | 9 | 89565405 | 89590849 | Rat | n/a | Region | gene |
| 879 | 41035686 | LOC120094743 | uncharacterized LOC120094743 | | 9 | 91029311 | 91033418 | Rat | n/a | Region | gene |
| 878 | 41309199 | LOC120094735 | uncharacterized LOC120094735 | | 9 | 87135652 | 87154677 | Rat | n/a | Region | gene |