| 1000 | 2807 | Foxa1 | forkhead box A1 | | 6 | 75099907 | 75136534 | Rat | n/a | Region | gene |
| 999 | 61849 | Psma6 | proteasome 20S subunit alpha 6 | | 6 | 72765534 | 72796554 | Rat | n/a | Region | gene |
| 998 | 3762 | Sstr1 | somatostatin receptor 1 | | 6 | 75832292 | 75836806 | Rat | n/a | Region | gene |
| 997 | 3171 | Nfkbia | NFKB inhibitor alpha | | 6 | 72858713 | 72861941 | Rat | n/a | Region | gene |
| 996 | 621390 | Srp54a | signal recognition particle 54A | | 6 | 72587584 | 72626878 | Rat | n/a | Region | gene |
| 995 | 621444 | Slc25a21 | solute carrier family 25 member 21 | | 6 | 74203439 | 74702902 | Rat | n/a | Region | gene |
| 994 | 620842 | Gemin2 | gem (nuclear organelle) associated protein 2 | | 6 | 76706424 | 76721154 | Rat | n/a | Region | gene |
| 993 | 1304647 | Snx6 | sorting nexin 6 | | 6 | 72230950 | 72274157 | Rat | n/a | Region | gene |
| 992 | 3866 | Nkx2-1 | NK2 homeobox 1 | | 6 | 73996601 | 74001483 | Rat | n/a | Region | gene |
| 991 | 1305089 | Prorp | protein only RNase P catalytic subunit | | 6 | 72669659 | 72762419 | Rat | n/a | Region | gene |
| 990 | 620642 | Ralgapa1 | Ral GTPase activating protein catalytic subunit alpha 1 | | 6 | 72977432 | 73252378 | Rat | n/a | Region | gene |
| 989 | 1306310 | Mbip | MAP3K12 binding inhibitory protein 1 | | 6 | 73808133 | 73825394 | Rat | n/a | Region | gene |
| 988 | 1304624 | 2700097O09Rikl | RIKEN cDNA 2700097009 gene like | | 6 | 72542166 | 72587511 | Rat | n/a | Region | gene |
| 987 | 1306982 | Cfl2 | cofilin 2 | | 6 | 72355664 | 72359709 | Rat | n/a | Region | gene |
| 986 | 1306006 | Brms1l | BRMS1 like transcriptional repressor | | 6 | 73266673 | 73300630 | Rat | n/a | Region | gene |
| 985 | 1560556 | Ttc6 | tetratricopeptide repeat domain 6 | | 6 | 75136827 | 75368176 | Rat | n/a | Region | gene |
| 984 | 1310629 | Nkx2-8 | NK2 homeobox 8 | | 6 | 74086274 | 74087977 | Rat | n/a | Region | gene |
| 983 | 1306199 | Baz1a | bromodomain adjacent to zinc finger domain, 1A | | 6 | 72389701 | 72512516 | Rat | n/a | Region | gene |
| 982 | 1307543 | Fbxo33 | F-box protein 33 | | 6 | 76900619 | 76934232 | Rat | n/a | Region | gene |
| 981 | 1306232 | Clec14a | C-type lectin domain containing 14A | | 6 | 75881470 | 75884612 | Rat | n/a | Region | gene |
| 980 | 1309207 | Ppp2r3c | protein phosphatase 2, regulatory subunit B'', gamma | | 6 | 72647025 | 72670885 | Rat | n/a | Region | gene |
| 979 | 1306949 | Insm2 | INSM transcriptional repressor 2 | | 6 | 72973861 | 72976453 | Rat | n/a | Region | gene |
| 978 | 1309103 | Sec23a | Sec23 homolog A, COPII coat complex component | | 6 | 76658793 | 76706125 | Rat | n/a | Region | gene |
| 977 | 1309357 | Lrfn5 | leucine rich repeat and fibronectin type III domain containing 5 | | 6 | 79466403 | 79822821 | Rat | n/a | Region | gene |
| 976 | 1309325 | Trappc6b | trafficking protein particle complex subunit 6B | | 6 | 76740898 | 76752035 | Rat | n/a | Region | gene |
| 975 | 1563850 | Akr1b8-ps2 | aldo-keto reductase family 1, member B8, pseudogene 2 | | 6 | 77569720 | 77571967 | Rat | n/a | Region | gene |
| 974 | 1359636 | Prps1l3 | phosphoribosyl pyrophosphate synthetase 1-like 3 | | 6 | 74755331 | 74763493 | Rat | n/a | Region | gene |
| 973 | 1560838 | Pax9 | paired box 9 | | 6 | 74186749 | 74203508 | Rat | n/a | Region | gene |
| 972 | 1359133 | Aldoart2 | aldolase 1 A retrogene 2 | | 6 | 72939821 | 72941511 | Rat | n/a | Region | gene |
| 971 | 1586428 | Eif4a1-ps8 | eukaryotic translation initiation factor 4A1, pseudogene 8 | | 6 | 76623866 | 76625179 | Rat | n/a | Region | gene |
| 970 | 1586488 | Ddx21-ps10 | DExD-box helicase 21, pseudogene 10 | | 6 | 76399435 | 76400992 | Rat | n/a | Region | gene |
| 969 | 1586460 | Mrto4-ps8 | mRNA turnover 4, ribosome maturation factor, pseudogene 8 | | 6 | 76608272 | 76609088 | Rat | n/a | Region | gene |
| 968 | 1582948 | Sec13-ps3 | SEC13 homolog, nuclear pore and COPII coat complex component, pseudogene 3 | | 6 | 78901558 | 78903012 | Rat | n/a | Region | gene |
| 967 | 1582931 | Pcbp2-ps9 | poly(rC) binding protein 2, pseudogene 9 | | 6 | 79162692 | 79163639 | Rat | n/a | Region | gene |
| 966 | 1588546 | Cyp51a1-ps1 | cytochrome P450, family 51, subfamily a, polypeptide 1, pseudogene 1 | | 6 | 76725421 | 76727572 | Rat | n/a | Region | gene |
| 965 | 1586499 | G3bp1-ps7 | G3BP stress granule assembly factor 1, pseudogene 7 | | 6 | 76297707 | 76301640 | Rat | n/a | Region | gene |
| 964 | 1587663 | Ldha-ps17 | lactate dehydrogenase A, pseudogene 17 | | 6 | 75727059 | 75728506 | Rat | n/a | Region | gene |
| 963 | 1560665 | Timm17al1 | translocase of inner mitochondrial membrane 17a-like 1 | | 6 | 79637054 | 79637877 | Rat | n/a | Region | gene |
| 962 | 1582962 | Apoo-ps1 | apolipoprotein O, pseudogene 1 | | 6 | 78858718 | 78859404 | Rat | n/a | Region | gene |
| 961 | 1597397 | Cct6a-ps11 | chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 11 | | 6 | 80442672 | 80487379 | Rat | n/a | Region | gene |
| 960 | 1598344 | Pcna-ps1 | proliferating cell nuclear antigen, pseudogene 1 | | 6 | 77792108 | 77793917 | Rat | n/a | Region | gene |
| 959 | 1597086 | Pnn | pinin, desmosome associated protein | | 6 | 76758138 | 76766451 | Rat | n/a | Region | gene |
| 958 | 1598268 | Nt5c2-ps4 | 5'-nucleotidase, cytosolic II, pseudogene 4 | | 6 | 77878137 | 77879911 | Rat | n/a | Region | gene |
| 957 | 1598269 | Paics-ps4 | phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 4 | | 6 | 77685661 | 77687084 | Rat | n/a | Region | gene |
| 956 | 1598273 | Ldha-ps5 | lactate dehydrogenase A, pseudogene 5 | | 6 | 73518434 | 73519312 | Rat | n/a | Region | gene |
| 955 | 1598274 | Gapdh-ps103 | Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 103 | | 6 | 73488112 | 73489095 | Rat | n/a | Region | gene |
| 954 | 1598271 | Rps6-ps8 | ribosomal protein S6, pseudogene 8 | | 6 | 75295728 | 75296526 | Rat | n/a | Region | gene |
| 953 | 1598272 | Pmpcb-ps2 | peptidase, mitochondrial processing subunit beta, pseudogene 2 | | 6 | 74024620 | 74043020 | Rat | n/a | Region | gene |
| 952 | 2319091 | Gemin8-ps1 | gem (nuclear organelle) associated protein 8, pseudogene 1 | | 6 | 80563943 | 80564624 | Rat | n/a | Region | gene |
| 951 | 2321461 | Rpl15-ps2 | ribosomal protein L15, pseudogene 2 | | 6 | 74118175 | 74118794 | Rat | n/a | Region | gene |
| 950 | 2322884 | Entr1l1 | endosome associated trafficking regulator 1 like 1 | | 6 | 79331210 | 79332658 | Rat | n/a | Region | gene |
| 949 | 2322466 | Trim13-ps1 | tripartite motif-containing 13, pseudogene 1 | | 6 | 80693878 | 80695270 | Rat | n/a | Region | gene |
| 948 | 2322517 | Fam167b-ps1 | family with sequence similarity 167, member B, pseudogene 1 | | 6 | 80629653 | 80630098 | Rat | n/a | Region | gene |
| 947 | 4888535 | Mir3593 | microRNA 3593 | | 6 | 73252647 | 73252737 | Rat | n/a | Region | gene |
| 946 | 2323636 | Fam177a1 | family with sequence similarity 177, member A1 | | 6 | 72632628 | 72647553 | Rat | n/a | Region | gene |
| 945 | 2325062 | Ftl1l2 | ferritin light chain 1 like 2 | | 6 | 73242612 | 73243527 | Rat | n/a | Region | gene |
| 944 | 6489654 | LOC100911923 | uncharacterized LOC100911923 | | 6 | 73954258 | 73994337 | Rat | n/a | Region | gene |
| 943 | 6488546 | Mia2 | MIA SH3 domain ER export factor 2 | | 6 | 76787508 | 76885246 | Rat | n/a | Region | gene |
| 942 | 6504372 | Mipol1 | mirror-image polydactyly 1 | | 6 | 74755293 | 75090403 | Rat | n/a | Region | gene |
| 941 | 7646365 | LOC102548461 | uncharacterized LOC102548461 | | 6 | 72274142 | 72290681 | Rat | n/a | Region | gene |
| 940 | 7624969 | Alg11-ps2 | ALG11, alpha-1,2-mannosyltransferase, pseudogene 2 | | 6 | 74259158 | 74260776 | Rat | n/a | Region | gene |
| 939 | 7561334 | LOC102548522 | uncharacterized LOC102548522 | | 6 | 72227217 | 72231374 | Rat | n/a | Region | gene |
| 938 | 7751922 | LOC102551688 | uncharacterized LOC102551688 | | 6 | 73884321 | 73909296 | Rat | n/a | Region | gene |
| 937 | 7744426 | LOC102546497 | uncharacterized LOC102546497 | | 6 | 73265530 | 73266513 | Rat | n/a | Region | gene |
| 936 | 7748644 | LOC102552092 | uncharacterized LOC102552092 | | 6 | 73999978 | 74011751 | Rat | n/a | Region | gene |
| 935 | 9159722 | LOC103695309 | glyceraldehyde-3-phosphate dehydrogenase pseudogene | | 6 | 77068612 | 77069628 | Rat | n/a | Region | gene |
| 934 | 9167354 | LOC103695296 | glyceraldehyde-3-phosphate dehydrogenase pseudogene | | 6 | 72328848 | 72329825 | Rat | n/a | Region | gene |
| 933 | 11370304 | LOC108351238 | uncharacterized LOC108351238 | | 6 | 73718891 | 73725872 | Rat | n/a | Region | gene |
| 932 | 11455066 | LOC108351364 | uncharacterized LOC108351364 | | 6 | 78124686 | 78134031 | Rat | n/a | Region | gene |
| 931 | 11452082 | LOC108351240 | uncharacterized LOC108351240 | | 6 | 74323478 | 74333662 | Rat | n/a | Region | gene |
| 930 | 11491526 | LOC108351236 | uncharacterized LOC108351236 | | 6 | 72494343 | 72522266 | Rat | n/a | Region | gene |
| 929 | 41086662 | Ldha-ps27 | lactate dehydrogenase A, pseudogene 27 | | 6 | 73537676 | 73538554 | Rat | n/a | Region | gene |
| 928 | 41087372 | LOC120093280 | U6 spliceosomal RNA | | 6 | 77236865 | 77236971 | Rat | n/a | Region | gene |
| 927 | 41111149 | LOC120093440 | small nucleolar RNA SNORA17 | | 6 | 77463428 | 77463557 | Rat | n/a | Region | gene |
| 926 | 41278108 | LOC120093303 | U6 spliceosomal RNA | | 6 | 72494427 | 72494534 | Rat | n/a | Region | gene |
| 925 | 41209044 | Hsp90ab1-ps16 | heat shock protein 90 alpha family class B member 1, pseudogene 16 | | 6 | 77502021 | 77511120 | Rat | n/a | Region | gene |
| 924 | 41148093 | U2l3 | U2 spliceosomal RNA like 3 | | 6 | 76730938 | 76731128 | Rat | n/a | Region | gene |
| 923 | 41331265 | Ldha-ps26 | lactate dehydrogenase A, pseudogene 26 | | 6 | 73528055 | 73528933 | Rat | n/a | Region | gene |
| 922 | 41393512 | LOC120093467 | small nucleolar RNA SNORA17 | | 6 | 74016215 | 74016333 | Rat | n/a | Region | gene |
| 921 | 41155391 | LOC120093489 | U2 spliceosomal RNA | | 6 | 75216559 | 75216724 | Rat | n/a | Region | gene |
| 920 | 41370298 | Ppa2-ps1 | inorganic pyrophosphatase 2, pseudogene | | 6 | 79856571 | 79860348 | Rat | n/a | Region | gene |
| 919 | 41194368 | LOC120093500 | U4 spliceosomal RNA | | 6 | 80863142 | 80863276 | Rat | n/a | Region | gene |
| 918 | 41271388 | LOC120093314 | U6 spliceosomal RNA | | 6 | 77571230 | 77571335 | Rat | n/a | Region | gene |
| 917 | 40971021 | LOC120093210 | uncharacterized LOC120093210 | | 6 | 72306493 | 72316083 | Rat | n/a | Region | gene |
| 916 | 40978870 | LOC120093300 | U6 spliceosomal RNA | | 6 | 77755219 | 77755326 | Rat | n/a | Region | gene |
| 915 | 40998590 | LOC120093311 | U6 spliceosomal RNA | | 6 | 79901491 | 79901594 | Rat | n/a | Region | gene |
| 914 | 40957535 | LOC120093486 | U2 spliceosomal RNA | | 6 | 80215463 | 80215666 | Rat | n/a | Region | gene |
| 913 | 40963012 | LOC120093310 | U6 spliceosomal RNA | | 6 | 74805795 | 74805882 | Rat | n/a | Region | gene |
| 912 | 40967547 | LOC120093292 | U6 spliceosomal RNA | | 6 | 73359711 | 73359813 | Rat | n/a | Region | gene |
| 911 | 41075203 | LOC120103538 | uncharacterized LOC120103538 | | 6 | 73760669 | 73766166 | Rat | n/a | Region | gene |
| 910 | 41050981 | LOC120093454 | U2 spliceosomal RNA | | 6 | 76495331 | 76495501 | Rat | n/a | Region | gene |
| 909 | 41335350 | LOC120093450 | small nucleolar RNA SNORA17 | | 6 | 73719985 | 73720115 | Rat | n/a | Region | gene |
| 908 | 41033385 | LOC120093510 | U6 spliceosomal RNA | | 6 | 75637071 | 75637177 | Rat | n/a | Region | gene |
| 907 | 41035462 | Snora26l1 | small nucleolar RNA, H/ACA box 26 like 1 | | 6 | 76823551 | 76823672 | Rat | n/a | Region | gene |
| 906 | 41016925 | U3l1 | small nucleolar RNA U3 like 1 | | 6 | 79656201 | 79656389 | Rat | n/a | Region | gene |
| 905 | 41305281 | Trnav-aac44 | transfer RNA valine (anticodon AAC) 44 | | 6 | 74694055 | 74694135 | Rat | n/a | Region | gene |
| 904 | 41067375 | Prelid1-ps3 | PRELI domain containing 1, pseudogene 3 | | 6 | 76616415 | 76617250 | Rat | n/a | Region | gene |
| 903 | 41044899 | LOC120103539 | uncharacterized LOC120103539 | | 6 | 74654296 | 74666802 | Rat | n/a | Region | gene |