RGD:8653307 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:8653307 -  Homo sapiens

RGD ID: 8653307
ClinVar ID: CV129882
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PICALM  
Reference Nucleotide: G
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 11 85,751,171
GRCh38 11 86,040,129
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001206947.1:c.-23-8518C>A
NG_028942.1:g.34753C>A
NC_000011.10:g.86040129G>T
NC_000011.9:g.85751171G>T
 intron|intron variant uncertain significance Lung cancer, somatic

Variant Details
Variant Transcripts
Gene Symbol:PICALM
Accession:XM_047427660
Location:5UTRS;INTRON

Gene Symbol:PICALM
Accession:XM_047427666
Location:5UTRS;INTRON

Gene Symbol:PICALM
Accession:NM_001206947
Location:5UTRS;INTRON

Gene Symbol:PICALM
Accession:XM_005274336
Location:INTRON

Gene Symbol:
Accession:
Location:INTRON

Gene Symbol:PICALM
Accession:XM_017018388
Location:INTRON

Gene Symbol:PICALM
Accession:XM_017018387
Location:INTRON

Gene Symbol:PICALM
Accession:NM_007166
Location:INTRON

Gene Symbol:PICALM
Accession:XM_005274340
Location:INTRON

Gene Symbol:PICALM
Accession:XM_005274328
Location:INTRON

Gene Symbol:PICALM
Accession:XM_017018385
Location:INTRON

Gene Symbol:PICALM
Accession:XM_017018384
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427667
Location:INTRON

Gene Symbol:PICALM
Accession:NM_001206946
Location:INTRON

Gene Symbol:PICALM
Accession:XM_017018381
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427669
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427665
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427668
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427662
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427659
Location:INTRON

Gene Symbol:PICALM
Accession:XM_017018383
Location:INTRON

Gene Symbol:PICALM
Accession:XM_024448700
Location:INTRON

Gene Symbol:PICALM
Accession:XM_005274326
Location:INTRON

Gene Symbol:PICALM
Accession:NM_001411034
Location:INTRON

Gene Symbol:PICALM
Accession:XM_005274334
Location:INTRON

Gene Symbol:PICALM
Accession:XM_005274337
Location:INTRON

Gene Symbol:PICALM
Accession:XM_005274322
Location:INTRON

Gene Symbol:PICALM
Accession:XM_017018386
Location:INTRON

Gene Symbol:PICALM
Accession:NM_001008660
Location:INTRON

Gene Symbol:PICALM
Accession:XM_005274329
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427661
Location:INTRON

Gene Symbol:PICALM
Accession:XM_047427663
Location:INTRON

Variant Samples