RGD:8648668 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:8648668 -  Homo sapiens

RGD ID: 8648668
RS ID: rs199476264
ClinVar ID: CV108829
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: NOD1  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 7 30,490,796
GRCh38 7 30,451,180
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NG_013025.1:g.32598C>T
NC_000007.14:g.30451180G>A
NC_000007.13:g.30490796G>A
NM_006092.4:c.2201+36C>T
More... 		intron|intron variant not provided none provided

Variant Details
Variant Transcripts
Gene Symbol:NOD1
Accession:XM_047419763
Location:INTRON

Gene Symbol:NOD1
Accession:XM_011515085
Location:INTRON

Gene Symbol:NOD1
Accession:NM_001354849
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419761
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419767
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419768
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419760
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419766
Location:INTRON

Gene Symbol:NOD1
Accession:XM_011515079
Location:INTRON

Gene Symbol:NOD1
Accession:XM_011515084
Location:INTRON

Gene Symbol:NOD1
Accession:XM_005249572
Location:INTRON

Gene Symbol:NOD1
Accession:XM_006715633
Location:INTRON

Gene Symbol:NOD1
Accession:XM_005249576
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419754
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419769
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419755
Location:INTRON

Gene Symbol:NOD1
Accession:XM_011515083
Location:INTRON

Gene Symbol:NOD1
Accession:XM_011515088
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419752
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419756
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419765
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419758
Location:INTRON

Gene Symbol:NOD1
Accession:NM_006092
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419757
Location:INTRON

Gene Symbol:NOD1
Accession:XM_005249568
Location:INTRON

Gene Symbol:NOD1
Accession:XM_011515087
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419759
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419770
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419762
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419764
Location:INTRON

Gene Symbol:NOD1
Accession:XM_047419753
Location:INTRON

Gene Symbol:NOD1
Accession:XR_926910
Location:INTRON;NON-CODING

Gene Symbol:NOD1
Accession:NR_149002
Location:INTRON;NON-CODING

Gene Symbol:NOD1
Accession:XR_007059981
Location:INTRON;NON-CODING

Gene Symbol:NOD1
Accession:XR_001744530
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV000089354 CLINVAR
dbSNP (RS) rs199476264 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene NOD1 CLINVAR
OMIM 605980 CLINVAR