RGD:8602595 Rat Genome Database

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Variant: RGD:8602595 -  Homo sapiens

RGD ID: 8602595
ClinVar ID: CV40501
Genic Status: GENIC
Type: deletion (SO:0000159) 
Associated Genes: PPIB  SNX22  
Reference Nucleotide: AAGA
Variant Nucleotide: ----
Position
Assembly Chr Position
GRCh37 15 64,448,314 - 64,448,318
GRCh38 15 64,156,115 - 64,156,119
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_000942.4:c.556_559del
LRG_10t1:c.556_559delAAGA
NM_000942.4:c.556_559delAAGA
LRG_10:g.12038_12041delAAGA
More... 		02/17/2011 non-coding transcript variant|frameshift variant|3 prime utr variant not provided

Variant Details
Variant Transcripts
Gene Symbol:SNX22
Accession:XM_017022581
Location:3UTRS;EXON

Gene Symbol:SNX22
Accession:NM_024798
Location:3UTRS;EXON

Gene Symbol:PPIB
Accession:NM_000942
Location:EXON
Amino Acid Prediction: T to T (synonymous)
Amino Acid Position: 187
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MLRLSERNMKVLLAAALIAGSVFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALA
TGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA
WLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAKE*

Gene Symbol:SNX22
Accession:NR_073534
Location:EXON;NON-CODING

Gene Symbol:SNX22
Accession:XM_005254677
Location:INTRON

Variant Samples