RGD:8578371 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:8578371 -  Homo sapiens

RGD ID: 8578371
ClinVar ID: CV112752
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PLD1  
Reference Nucleotide: T
Variant Nucleotide: C
Position
Assembly Chr Position
GRCh37 3 171,451,994
GRCh38 3 171,734,204
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_002662.4:c.540+661A>G
NG_029851.1:g.81291A>G
NC_000003.12:g.171734204T>C
NC_000003.11:g.171451994T>C
 intron|intron variant uncertain significance Lung cancer, somatic

Variant Details
Variant Transcripts
Gene Symbol:PLD1
Accession:XM_005247533
Location:INTRON

Gene Symbol:PLD1
Accession:XM_047448318
Location:INTRON

Gene Symbol:PLD1
Accession:XM_047448317
Location:INTRON

Gene Symbol:PLD1
Accession:XM_011512899
Location:INTRON

Gene Symbol:PLD1
Accession:XM_005247534
Location:INTRON

Gene Symbol:PLD1
Accession:XM_017006624
Location:INTRON

Gene Symbol:PLD1
Accession:XM_047448316
Location:INTRON

Gene Symbol:PLD1
Accession:XM_011512897
Location:INTRON

Gene Symbol:PLD1
Accession:NM_002662
Location:INTRON

Gene Symbol:PLD1
Accession:NM_001130081
Location:INTRON

Gene Symbol:PLD1
Accession:XM_011512898
Location:INTRON

Gene Symbol:PLD1
Accession:XR_007095693
Location:INTRON;NON-CODING

Variant Samples