RGD:28908140 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:28908140 -  Homo sapiens

RGD ID: 28908140
RS ID: rs887467677
ClinVar ID: CV867535
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: CDON  LOC130007022  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 11 125,933,130
GRCh38 11 126,063,235
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NG_029776.1:g.5058C>T
NC_000011.10:g.126063235G>A
NC_000011.9:g.125933130G>A
NM_016952.4:c.-71C>T
More... 		01/12/2018 5 prime utr variant uncertain significance
Disease Annotations     Click to see Annotation Detail View


Variant Details
Variant Transcripts
Gene Symbol:CDON
Accession:NM_001243597
Location:5UTRS;EXON

Gene Symbol:CDON
Accession:NM_016952
Location:5UTRS;EXON

Gene Symbol:CDON
Accession:XM_047427064
Location:5UTRS;INTRON

Gene Symbol:CDON
Accession:XM_017017873
Location:5UTRS;INTRON

Gene Symbol:CDON
Accession:XM_047427063
Location:INTRON

Gene Symbol:CDON
Accession:XM_047427060
Location:INTRON

Gene Symbol:CDON
Accession:XM_011542865
Location:INTRON

Gene Symbol:CDON
Accession:XM_047427062
Location:INTRON

Gene Symbol:CDON
Accession:XM_047427065
Location:INTRON

Gene Symbol:CDON
Accession:NM_001378964
Location:INTRON

Gene Symbol:CDON
Accession:XM_011542862
Location:INTRON

Gene Symbol:CDON
Accession:XM_011542864
Location:INTRON

Gene Symbol:CDON
Accession:XM_047427061
Location:INTRON

Gene Symbol:CDON
Accession:XM_011542863
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV001107653 CLINVAR
dbSNP (RS) rs887467677 CLINVAR
MedGen C3280215 CLINVAR
NCBI Gene CDON CLINVAR
  LOC130007022 CLINVAR
OMIM 608707 CLINVAR
  614226 CLINVAR