RGD:28901858 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:28901858 -  Homo sapiens

RGD ID: 28901858
RS ID: rs1021493177
ClinVar ID: CV866977
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: ATM  C11orf65  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 11 108,238,388
GRCh38 11 108,367,661
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
LRG_135t1:c.*2153G>A
NM_000051.4:c.*2153G>A
NM_001351834.2:c.*2153G>A
NM_001330368.2:c.640+18259C>T
More... 		01/13/2018 3 prime utr variant uncertain significance AT, COMPLEMENTATION GROUP C; Ataxia-telangiectasia; ATAXIA-TELANGIECTASIA, COMPLEMENTATION GROUP A; Ataxia-telangiectasia, complementation group D; Ataxia-telangiectasia, complementation group E; ATAXIA-TELANGIECTASIA, FRESNO VARIANT; Cerebello-oculocutaneous telangiectasia; Immunodeficiency with ataxia telangiectasia; Louis-Bar syndrome
Disease Annotations     Click to see Annotation Detail View


Variant Details
Variant Transcripts
Gene Symbol:ATM
Accession:XM_047426975
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_047426978
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_011542842
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_047426979
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_006718845
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:NM_000051
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_006718843
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_047426976
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_011542844
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_005271562
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:NM_001351834
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_011542840
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_047426977
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_017017790
Location:3UTRS;EXON

Gene Symbol:ATM
Accession:XM_047426981
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426467
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426459
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426471
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426472
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426466
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_011542641
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426470
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426478
Location:INTRON

Gene Symbol:ATM
Accession:NM_001351835
Location:INTRON

Gene Symbol:C11orf65
Accession:NM_001330368
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_005271412
Location:INTRON

Gene Symbol:ATM
Accession:XM_011542843
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_005271413
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_011542643
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426463
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426468
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426464
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426460
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426476
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426473
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426462
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426458
Location:INTRON

Gene Symbol:ATM
Accession:NM_001351836
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426461
Location:INTRON

Gene Symbol:C11orf65
Accession:NM_152587
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426477
Location:INTRON

Gene Symbol:C11orf65
Accession:NM_001351110
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426474
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426465
Location:INTRON

Gene Symbol:C11orf65
Accession:XM_047426469
Location:INTRON

Gene Symbol:C11orf65
Accession:NR_147053
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV001104418 CLINVAR
dbSNP (RS) rs1021493177 CLINVAR
MedGen C0004135 CLINVAR
NCBI Gene ATM CLINVAR
  C11orf65 CLINVAR
OMIM 208900 CLINVAR
  607585 CLINVAR
SNOMED CT 68504005 CLINVAR