RGD:156015886 Rat Genome Database

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Variant: RGD:156015886 -  Homo sapiens

RGD ID: 156015886
ClinVar ID: CV2270058
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SYN2  TIMP4  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 3 12,198,961
GRCh38 3 12,157,461
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_003256.4:c.161G>A
NM_003178.6:c.775-4085C>T
NM_133625.6:c.775-4085C>T
NG_011728.2:g.158074C>T
More... 		02/17/2022 intron variant uncertain significance AllHighlyPenetrant

Variant Details
Variant Transcripts
Gene Symbol:TIMP4
Accession:NM_003256
Location:EXON
Amino Acid Prediction: S to I (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISIEKVVPASADPADTEKMLRYEIKQIKM
FKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQVLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQI
TTCYTVPCTISAPNECLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP*

Gene Symbol:SYN2
Accession:NM_133625
Location:INTRON

Gene Symbol:SYN2
Accession:NM_003178
Location:INTRON

Gene Symbol:SYN2
Accession:XM_006713311
Location:INTRON

Gene Symbol:SYN2
Accession:XM_006713312
Location:INTRON

Gene Symbol:SYN2
Accession:XM_006713313
Location:INTRON

Gene Symbol:SYN2
Accession:XM_017007087
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV004129032 CLINVAR
MedGen CN169374 CLINVAR
NCBI Gene SYN2 CLINVAR
  TIMP4 CLINVAR
OMIM 600755 CLINVAR
  601915 CLINVAR