RGD:152056058 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:152056058 -  Homo sapiens

RGD ID: 152056058
RS ID: rs1354264402
ClinVar ID: CV1571865
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: MTHFD1  ZBTB25  
Reference Nucleotide: C
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 14 64,924,952
GRCh38 14 64,458,234
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
LRG_1243t1:c.2739C>G
NM_001304508.1:c.174-8596G>C
NM_001364837.1:c.2719-1525C>G
NM_005956.4:c.2739C>G
More... 		07/08/2021 intron variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:MTHFD1
Accession:NM_005956
Location:EXON
Amino Acid Prediction: L to L (synonymous)
Amino Acid Position: 913
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAPAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESE
VMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGKLARGDLNDCFIPCTPKGCLELIKETG
VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINY
VPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEKFKPGKWMIQYNNLNLKTPVPSDI
DISRSCKPKPIGKLAREIGLLSEEVELYGETKAKVLLSALERLKHRPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAH
LYQNVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLV
PSVNGVRRFSDIQIRRLKRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKGHTRTAQ
FDISVASEIMAVLALTTSLEDMRERLGKMVVASSKKGEPVSAEDLGVSGALTVLMKDAIKPNLMQTLEGTPVFVHAGPFA
NIAHGNSSIIADRIALKLVGPEGFVVTEAGFGADIGMEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGPTVTAGLPLP
KAYIQENLELVEKGFSNLKKQIENARMFGIPVVVAVNAFKTDTESELDLISRLSREHGAFDAVKCTHWAEGGKGALALAQ
AVQRAAQAPSSFQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTKQGFGNLPICMAKTHLSLSHNPEQKGV
PTGFILPIRDIRASVGAGFLYPLVGTMSTMPGLPTRPCFYDIDLDPETEQVNGLF*

Gene Symbol:MTHFD1
Accession:NM_001364837
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001304508
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001354683
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001354685
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_006977
Location:INTRON

Gene Symbol:ZBTB25
Accession:XM_047431770
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001354686
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001304507
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001354682
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001354684
Location:INTRON

Gene Symbol:ZBTB25
Accession:NM_001354687
Location:INTRON

Gene Symbol:ZBTB25
Accession:XR_943522
Location:INTRON;NON-CODING

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV002173377 CLINVAR
dbSNP (RS) rs1354264402 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene MTHFD1 CLINVAR
  ZBTB25 CLINVAR
OMIM 172460 CLINVAR
  194541 CLINVAR