RGD:15177517 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:15177517 -  Homo sapiens

RGD ID: 15177517
RS ID: rs200437703
ClinVar ID: CV731288
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC124904724  LOC130064606  PLAUR  
Reference Nucleotide: C
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 19 44,174,212
GRCh38 19 43,670,060
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001005377.3:c.55+6G>T
NM_001301037.2:c.55+6G>T
NM_002659.4:c.55+6G>T
NG_032898.1:g.5287G>T
More... 		08/09/2018 intron variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:LOC124904724
Accession:XR_007067264
Location:EXON;NON-CODING

Gene Symbol:PLAUR
Accession:XM_047438925
Location:INTRON

Gene Symbol:PLAUR
Accession:NM_001005377
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438929
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438931
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438934
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438928
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_017026872
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438933
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438936
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438935
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438932
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438937
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438927
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438930
Location:INTRON

Gene Symbol:PLAUR
Accession:NM_001005376
Location:INTRON

Gene Symbol:PLAUR
Accession:NM_001301037
Location:INTRON

Gene Symbol:PLAUR
Accession:NM_002659
Location:INTRON

Gene Symbol:PLAUR
Accession:XM_047438926
Location:INTRON

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV000884842 CLINVAR
dbSNP (RS) rs200437703 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene LOC130064606 CLINVAR
  PLAUR CLINVAR
OMIM 173391 CLINVAR