RGD:151764048 Rat Genome Database

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Variant: RGD:151764048 -  Homo sapiens

RGD ID: 151764048
RS ID: rs370129424
ClinVar ID: CV1434080
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: TCF3  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 19 1,632,031
GRCh38 19 1,632,032
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
LRG_1325t1:c.298+6T>C
LRG_1325t2:c.298+6T>C
NM_001136139.4:c.298+6T>C
NM_001351778.2:c.298+6T>C
More... 		04/13/2021 intron variant likely benign|uncertain significance none provided
Disease Annotations     Click to see Annotation Detail View


Variant Details
Variant Transcripts
Gene Symbol:TCF3
Accession:XM_047439258
Location:EXON
Amino Acid Prediction: C to R (nonsynonymous)
Amino Acid Position: 102
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH
FTESHSSLSSSTFLGPGLGGERLAWCGPSAVHRCADVGLGMVSARTAPGKSGERGAYASFGRDAGVGGLTQAGFLSGELA
LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP
APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSAS
SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR
AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDG
LAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPD
EDEDDLLPPEQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNL
NPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM*

Gene Symbol:TCF3
Accession:XM_047439259
Location:EXON
Amino Acid Prediction: C to R (nonsynonymous)
Amino Acid Position: 102
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH
FTESHSSLSSSTFLGPGLGGERLAWCGPSAVHRCADVGLGMVSARTAPGKSGERGAYASFGRDAGVGGLTQAGFLSGELA
LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP
APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSAS
SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR
AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDG
LAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPD
EDEDDLLPPEQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNL
NPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM*

Gene Symbol:TCF3
Accession:XM_047439261
Location:EXON
Amino Acid Prediction: C to R (nonsynonymous)
Amino Acid Position: 102
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH
FTESHSSLSSSTFLGPGLGGERLAWCGPSAVHRCADVGLGMVSARTAPGKSGERGAYASFGRDAGVGGLTQAGFLSGELA
LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP
APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSAS
SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR
AGAPGALSPSYDGGLHGLSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDGL
AGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPDE
DEDDLLPPEQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNLN
PKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM*

Gene Symbol:TCF3
Accession:XM_047439262
Location:EXON
Amino Acid Prediction: C to R (nonsynonymous)
Amino Acid Position: 102
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH
FTESHSSLSSSTFLGPGLGGERLAWCGPSAVHRCADVGLGMVSARTAPGKSGERGAYASFGRDAGVGGLTQAGFLSGELA
LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP
APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSAS
SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR
AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDG
LAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSST
DEVLSLEEKDLRDRERRMANNARERVRVRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPK
AACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM*

Gene Symbol:TCF3
Accession:XM_017027178
Location:EXON
Amino Acid Prediction: C to R (nonsynonymous)
Amino Acid Position: 102
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH
FTESHSSLSSSTFLGPGLGGERLAWCGPSAVHRCADVGLGMVSARTAPGKSGERGAYASFGRDAGVGGLTQAGFLSGELA
LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP
APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSAS
SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR
AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDG
LAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSST
DEVLSLEEKDLRDRERRMANNARERVRVRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPK
AACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM*

Gene Symbol:TCF3
Accession:XM_006722855
Location:EXON
Amino Acid Prediction: C to R (nonsynonymous)
Amino Acid Position: 102
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH
FTESHSSLSSSTFLGPGLGGERLAWCGPSAVHRCADVGLGMVSARTAPGKSGERGAYASFGRDAGVGGLTQAGFLSGELA
LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP
APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSAS
SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR
AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDG
LAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSST
DEVLSLEEKDLRDRERRMANNARERVRVRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPK
AACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM*

Gene Symbol:TCF3
Accession:XM_047439260
Location:EXON
Amino Acid Prediction: C to R (nonsynonymous)
Amino Acid Position: 102
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH
FTESHSSLSSSTFLGPGLGGERLAWCGPSAVHRCADVGLGMVSARTAPGKSGERGAYASFGRDAGVGGLTQAGFLSGELA
LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP
APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSAS
SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR
AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDG
LAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPD
EDEDDLLPPEQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNL
NPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM*

Gene Symbol:TCF3
Accession:XM_047439290
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439265
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439264
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439267
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439270
Location:INTRON

Gene Symbol:TCF3
Accession:XM_017027181
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439298
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439273
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439272
Location:INTRON

Gene Symbol:TCF3
Accession:NM_001351778
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439284
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439271
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439293
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439292
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439288
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439294
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439281
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439297
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439279
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439287
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439280
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439275
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439263
Location:INTRON

Gene Symbol:TCF3
Accession:NM_001136139
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439282
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439268
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439266
Location:INTRON

Gene Symbol:TCF3
Accession:XM_011528225
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439286
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439277
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439291
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439276
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439274
Location:INTRON

Gene Symbol:TCF3
Accession:NM_003200
Location:INTRON

Gene Symbol:TCF3
Accession:NM_001351779
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439285
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439278
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439289
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439296
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439295
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439269
Location:INTRON

Gene Symbol:TCF3
Accession:XM_011528226
Location:INTRON

Gene Symbol:TCF3
Accession:XM_047439283
Location:INTRON

Variant Samples
Additional References at PubMed
PMID:9536098   PMID:17576681   PMID:25741868   PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV002024703 CLINVAR
  RCV003941252 CLINVAR
dbSNP (RS) rs370129424 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene TCF3 CLINVAR
OMIM 147141 CLINVAR