RGD:15152061 Rat Genome Database

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Variant: RGD:15152061 -  Homo sapiens

RGD ID: 15152061
RS ID: rs373219701
ClinVar ID: CV749378
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC126807556  SPARC  
Reference Nucleotide: G
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 5 151,043,715
GRCh38 5 151,664,154
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001309443.2:c.813C>A
NM_001309444.2:c.816C>A
NM_003118.4:c.816C>A
NG_042174.1:g.27901C>A
More... 		04/06/2018 synonymous variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:SPARC
Accession:NM_001309444
Location:EXON
Amino Acid Prediction: T to T (synonymous)
Amino Acid Position: 272
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCKHG
KVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSEL
TEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ
HPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQRYRQGSCDLNPLLPQYRILSLTLPFV
FPPMFKMFGWFVVLPGDKVLT*

Gene Symbol:SPARC
Accession:NM_003118
Location:EXON
Amino Acid Prediction: T to T (synonymous)
Amino Acid Position: 272
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCKHG
KVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSEL
TEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ
HPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI*

Gene Symbol:SPARC
Accession:NM_001309443
Location:EXON
Amino Acid Prediction: T to T (synonymous)
Amino Acid Position: 271
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MRAWIFFLLCLAGRALAAPQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCKHGK
VCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELT
EFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQH
PIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI*
Variant Samples
Additional References at PubMed
PMID:25741868   PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV000923799 CLINVAR
  RCV003970514 CLINVAR
dbSNP (RS) rs373219701 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene LOC126807556 CLINVAR
  SPARC CLINVAR
OMIM 182120 CLINVAR