RGD:15097610 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:15097610 -  Homo sapiens

RGD ID: 15097610
RS ID: rs61737035
ClinVar ID: CV706087
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: RHOXF1  RHOXF1-AS1  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 X 119,249,545
GRCh38 X 120,115,635
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_139282.3:c.228G>A
NC_000023.11:g.120115635C>T
NC_000023.10:g.119249545C>T
NM_139282.2:c.228G>A
More... 		01/03/2019 synonymous variant benign none provided

Variant Details
Variant Transcripts
Gene Symbol:RHOXF1
Accession:XM_011531281
Location:EXON
Amino Acid Prediction: E to D (nonsynonymous)
Amino Acid Position: 104
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MLRITMKTRAISLAADATEFVQGRSAPAMARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEG
GVNHENGMNRDGGMIPEGGGGNQDPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPT
RRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANELRADPDDCVYIVVD*

Gene Symbol:RHOXF1
Accession:NM_139282
Location:EXON
Amino Acid Prediction: E to D (nonsynonymous)
Amino Acid Position: 76
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGMNRDGGMIPEGGGGNQDPRQQ
PQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRR
HQRELMLANELRADPDDCVYIVVD*

Gene Symbol:RHOXF1-AS1
Accession:NR_131238
Location:INTRON;NON-CODING

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV000958354 CLINVAR
dbSNP (RS) rs61737035 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene RHOXF1 CLINVAR
  RHOXF1-AS1 CLINVAR
OMIM 300446 CLINVAR