RGD:150534490 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:150534490 -  Homo sapiens

RGD ID: 150534490
RS ID: rs149822836
ClinVar ID: CV1306203
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LIPJ  
Reference Nucleotide: T
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 10 90,343,252
GRCh38 10 88,583,495
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NC_000010.11:g.88583495T>A
NC_000010.10:g.90343252T>A
NR_172141.1:n.589T>A
 07/27/2020 non-coding transcript variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:LIPJ
Accession:XM_006717635
Location:5UTRS;EXON

Gene Symbol:LIPJ
Accession:NR_172141
Location:EXON;NON-CODING

Gene Symbol:LIPJ
Accession:NM_001394640
Location:INTRON

Gene Symbol:LIPJ
Accession:XM_011539315
Location:INTRON

Gene Symbol:LIPJ
Accession:XM_047424642
Location:INTRON

Gene Symbol:LIPJ
Accession:NM_001010939
Location:INTRON

Gene Symbol:LIPJ
Accession:XM_005269542
Location:INTRON

Gene Symbol:LIPJ
Accession:XM_011539318
Location:INTRON

Gene Symbol:LIPJ
Accession:XM_047424643
Location:INTRON

Gene Symbol:LIPJ
Accession:XM_011539319
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV001757392 CLINVAR
dbSNP (RS) rs149822836 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene LIPJ CLINVAR
  RNLS CLINVAR
OMIM 609360 CLINVAR
  613921 CLINVAR