RGD:150442281 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:150442281 -  Homo sapiens

RGD ID: 150442281
RS ID: rs3729967
ClinVar ID: CV1204681
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: CALM2  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 2 47,403,760
GRCh38 2 47,176,621
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001305625.2:c.-106+228G>A
NM_001305624.1:c.-80G>A
NG_042065.1:g.5316G>A
NC_000002.12:g.47176621C>T
More... 		07/09/2018 5 prime utr variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:CALM2
Accession:NM_001305624
Location:5UTRS;EXON

Gene Symbol:CALM2
Accession:NM_001305625
Location:5UTRS;INTRON

Gene Symbol:CALM2
Accession:NM_001305626
Location:INTRON

Gene Symbol:CALM2
Accession:NM_001743
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV001583788 CLINVAR
dbSNP (RS) rs3729967 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene CALM2 CLINVAR
  LOC129933685 CLINVAR
OMIM 114182 CLINVAR