RGD:150439311 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:150439311 -  Homo sapiens

RGD ID: 150439311
RS ID: rs55901892
ClinVar ID: CV1287023
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PRDM5  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 4 121,702,697
GRCh38 4 120,781,542
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_018699.4:c.1283-239A>G
NM_001379104.1:c.1316-239A>G
NM_001300823.2:c.1190-239A>G
NM_001300824.2:c.1190-239A>G
More... 		06/26/2018 intron variant benign none provided

Variant Details
Variant Transcripts
Gene Symbol:PRDM5
Accession:NM_001300823
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_047449558
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_005262708
Location:INTRON

Gene Symbol:PRDM5
Accession:NM_001300824
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_011531563
Location:INTRON

Gene Symbol:PRDM5
Accession:NM_001379104
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_047449559
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_011531564
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_011531566
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_047449555
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_011531568
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_017007668
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_011531565
Location:INTRON

Gene Symbol:PRDM5
Accession:NM_001379106
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_047449557
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_017007671
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_017007670
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_047449554
Location:INTRON

Gene Symbol:PRDM5
Accession:XM_047449556
Location:INTRON

Gene Symbol:PRDM5
Accession:NM_018699
Location:INTRON

Gene Symbol:PRDM5
Accession:XR_938680
Location:INTRON;NON-CODING

Gene Symbol:PRDM5
Accession:XR_938678
Location:INTRON;NON-CODING

Gene Symbol:PRDM5
Accession:XR_938679
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV001724938 CLINVAR
dbSNP (RS) rs55901892 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene PRDM5 CLINVAR
OMIM 614161 CLINVAR