RGD:150428112 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:150428112 -  Homo sapiens

RGD ID: 150428112
RS ID: rs11567894
ClinVar ID: CV1187633
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: GATA3  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 10 8,100,048
GRCh38 10 8,058,085
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001002295.2:c.242-220C>T
NM_002051.3:c.242-220C>T
NG_015859.1:g.8382C>T
NC_000010.11:g.8058085C>T
More... 		05/01/2019 intron variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:GATA3
Accession:XM_005252443
Location:INTRON

Gene Symbol:GATA3
Accession:XM_005252442
Location:INTRON

Gene Symbol:GATA3
Accession:NM_001002295
Location:INTRON

Gene Symbol:GATA3
Accession:XM_047425044
Location:INTRON

Gene Symbol:GATA3
Accession:NM_002051
Location:INTRON

Gene Symbol:GATA3
Accession:XM_047425045
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV001561825 CLINVAR
dbSNP (RS) rs11567894 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene GATA3 CLINVAR
OMIM 131320 CLINVAR