RGD:150334217 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:150334217 -  Homo sapiens

RGD ID: 150334217
RS ID: rs2239769
ClinVar ID: CV1173496
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PDGFB  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 22 39,626,024
GRCh38 22 39,230,019
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NC_000022.10:g.39626024C>T
NM_033016.3:c.556+65G>A
NM_002608.4:c.601+65G>A
NG_012111.1:g.19934G>A
More... 		07/17/2018 intron variant benign none provided

Variant Details
Variant Transcripts
Gene Symbol:PDGFB
Accession:NM_002608
Location:INTRON

Gene Symbol:PDGFB
Accession:XM_047441393
Location:INTRON

Gene Symbol:PDGFB
Accession:NM_033016
Location:INTRON

Gene Symbol:PDGFB
Accession:XM_047441394
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV001539884 CLINVAR
dbSNP (RS) rs2239769 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene PDGFB CLINVAR
OMIM 190040 CLINVAR