RGD:14694102 Rat Genome Database

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Variant: RGD:14694102 -  Homo sapiens

RGD ID: 14694102
RS ID: rs1558464561
ClinVar ID: CV619203
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: MSH2  
Reference Nucleotide: A
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 2 47,641,573
GRCh38 2 47,414,434
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
LRG_218t1:c.942+16A>T
LRG_218:g.16311A>T
NG_007110.2:g.16311A>T
NC_000002.12:g.47414434A>T
More... 		07/19/2017 intron variant likely benign Cancer predisposition; Hereditary Cancer Syndrome; Hereditary neoplastic syndrome; Neoplastic Syndromes, Hereditary; Tumor predisposition
Disease Annotations     Click to see Annotation Detail View


Variant Details
Variant Transcripts
Gene Symbol:MSH2
Accession:NM_001406658
Location:5UTRS;INTRON

Gene Symbol:MSH2
Accession:NM_001406662
Location:5UTRS;INTRON

Gene Symbol:MSH2
Accession:NM_001406661
Location:5UTRS;INTRON

Gene Symbol:MSH2
Accession:NM_001406659
Location:5UTRS;INTRON

Gene Symbol:MSH2
Accession:NM_001406660
Location:5UTRS;INTRON

Gene Symbol:MSH2
Accession:NM_001406669
Location:5UTRS;INTRON

Gene Symbol:MSH2
Accession:XM_047444416
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406646
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406640
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406656
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406666
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406647
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406648
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406635
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406652
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406650
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406637
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406631
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406654
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406657
Location:INTRON

Gene Symbol:MSH2
Accession:NM_000251
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406649
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406636
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406674
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406672
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406639
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406632
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406641
Location:INTRON

Gene Symbol:
Accession:
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406634
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406642
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406655
Location:INTRON

Gene Symbol:
Accession:
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406643
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406638
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406644
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406651
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001258281
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406633
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406645
Location:INTRON

Gene Symbol:MSH2
Accession:NM_001406653
Location:INTRON

Gene Symbol:MSH2
Accession:NR_176244
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176234
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176241
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176235
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176248
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176247
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176243
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176233
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176240
Location:INTRON;NON-CODING

Gene Symbol:
Accession:
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176230
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176239
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176237
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176236
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176245
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176238
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176232
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176250
Location:INTRON;NON-CODING

Gene Symbol:
Accession:
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176249
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176246
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176242
Location:INTRON;NON-CODING

Gene Symbol:MSH2
Accession:NR_176231
Location:INTRON;NON-CODING

Variant Samples
Additional References at PubMed
PMID:25741868  


Additional Information

Database Acc Id Source(s)
ClinVar RCV000776110 CLINVAR
dbSNP (RS) rs1558464561 CLINVAR
MedGen C0027672 CLINVAR
NCBI Gene MSH2 CLINVAR
OMIM 609309 CLINVAR
SNOMED CT 699346009 CLINVAR