RGD:13786848 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:13786848 -  Homo sapiens

RGD ID: 13786848
RS ID: rs71647841
ClinVar ID: CV549803
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PANK2  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 20 3,891,499
GRCh38 20 3,910,852
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NG_008131.3:g.27014C>T
NC_000020.11:g.3910852C>T
NC_000020.10:g.3891499C>T
NM_153638.2:c.1235+22C>T
More... 		09/04/2018 intron variant benign|likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:PANK2
Accession:NM_001324193
Location:5UTRS;INTRON

Gene Symbol:PANK2
Accession:NM_024960
Location:INTRON

Gene Symbol:PANK2
Accession:NM_001386393
Location:INTRON

Gene Symbol:PANK2
Accession:NM_153640
Location:INTRON

Gene Symbol:PANK2
Accession:NM_001324192
Location:INTRON

Gene Symbol:PANK2
Accession:NM_001324191
Location:INTRON

Gene Symbol:PANK2
Accession:NM_153638
Location:INTRON

Gene Symbol:PANK2
Accession:NR_136715
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV000675592 CLINVAR
dbSNP (RS) rs71647841 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene PANK2 CLINVAR
OMIM 606157 CLINVAR