RGD:11654023 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:11654023 -  Homo sapiens

RGD ID: 11654023
RS ID: rs886059165
ClinVar ID: CV297325
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LRAT  
Reference Nucleotide: T
Variant Nucleotide: C
Position
Assembly Chr Position
GRCh37 4 155,670,837
GRCh38 4 154,749,685
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NG_009110.1:g.10675T>C
NC_000004.12:g.154749685T>C
NC_000004.11:g.155670837T>C
NM_004744.3:c.*549T>C
More... 		06/14/2016 3 prime utr variant uncertain significance Congenital retinal blindness; Leber's amaurosis; Tapetoretinal degeneration
Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype

Variant Details
Variant Transcripts
Gene Symbol:LRAT
Accession:NM_004744
Location:3UTRS;EXON

Gene Symbol:LRAT
Accession:NM_001301645
Location:3UTRS;EXON

Gene Symbol:LRAT
Accession:XM_047416405
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV000314421 CLINVAR
  RCV000369131 CLINVAR
  RCV000401913 CLINVAR
dbSNP (RS) rs886059165 CLINVAR
MedGen C0035334 CLINVAR
  C0339527 CLINVAR
  C2750063 CLINVAR
NCBI Gene LRAT CLINVAR
OMIM 204000 CLINVAR
  268000 CLINVAR
  604863 CLINVAR
  613341 CLINVAR
SNOMED CT 193413001 CLINVAR
  28835009 CLINVAR