RGD:11050379 Rat Genome Database

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Variant: RGD:11050379 -  Homo sapiens

RGD ID: 11050379
RS ID: rs773785934
ClinVar ID: CV224796
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC130067862  SCO2  TYMP  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 22 50,964,348
GRCh38 22 50,525,919
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Age of Onset Prevalence Trait Synonyms
c.1301-1G>A
NM_001169110.1:c.-14+82G>A
NM_001257989.1:c.1316-1G>A
LRG_727t1:c.1301-1G>A
More... 		08/02/2023 intron variant|splice acceptor variant pathogenic|likely pathogenic adolescent|childhood 1-9 / 1 000 000 Mitochondrial DNA depletion syndrome 1 (MNGIE type); Mitochondrial DNA Depletion Syndrome, MNGIE Form; Mitochondrial neurogastrointestinal encephalomyopathy syndrome; MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED; MNGIE, TYMP-RELATED; POLIP SYNDROME; POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION
Disease Annotations     Click to see Annotation Detail View


Variant Details
Variant Transcripts
Gene Symbol:SCO2
Accession:NM_001169109
Location:5UTRS;INTRON

Gene Symbol:SCO2
Accession:NM_001169110
Location:5UTRS;INTRON

Gene Symbol:TYMP
Accession:NM_001113756
Location:INTRON

Gene Symbol:SCO2
Accession:NM_005138
Location:INTRON

Gene Symbol:SCO2
Accession:NM_001169111
Location:INTRON

Gene Symbol:TYMP
Accession:NM_001953
Location:INTRON

Gene Symbol:TYMP
Accession:NM_001257988
Location:INTRON

Gene Symbol:TYMP
Accession:NM_001113755
Location:INTRON

Gene Symbol:TYMP
Accession:NM_001257989
Location:INTRON

Variant Samples
Additional References at PubMed
PMID:9924029   PMID:25741868  


Additional Information

Database Acc Id Source(s)
ClinVar RCV000208666 CLINVAR
dbSNP (RS) rs773785934 CLINVAR
MedGen C4551995 CLINVAR
NCBI Gene LOC130067862 CLINVAR
  SCO2 CLINVAR
  TYMP CLINVAR
OMIM 131222 CLINVAR
  603041 CLINVAR
  604272 CLINVAR