RGD:10042789 Rat Genome Database

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Variant: RGD:10042789 -  Homo sapiens

RGD ID: 10042789
RS ID: rs786204837
ClinVar ID: CV172291
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: WNT5A  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 3 55,513,527
GRCh38 3 55,479,499
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Age of Onset Prevalence Trait Synonyms
NM_001377271.1:c.161G>A
NM_001377272.1:c.161G>A
NM_003392.7:c.206G>A
NP_001364200.1:p.Cys54Tyr
More...
09/01/2017 missense variant pathogenic|uncertain significance|not provided neonatal/infancy <1 / 1 000 000 Acral dysostosis with facial and genital abnormalities; Costovertebral segmentation defect with mesomelia (formerly); Covesdem syndrome (formerly); Fetal face syndrome; Robinow dwarfism; WNT5A-Related Robinow Syndrome, Autosomal Dominant
Disease Annotations     Click to see Annotation Detail View


Variant Details
Variant Transcripts
Gene Symbol:WNT5A
Accession:NM_003392
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 69
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MKKSIGILSPGVALGMAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQK
KLCHLYQDHMQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELS
TCGCSRAARPKDLPRDWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKC
HGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGT
QGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448861
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_011534089
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_017007128
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_011534088
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448854
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:NM_001377272
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448859
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448860
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:NM_001256105
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448853
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448858
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:NM_001377271
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448856
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_011534086
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_017007127
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 83
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MHPTTQVPTTLGTLQEKSIGILSPGVALGMAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQ
PLYSQLAGLSQGQKKLCHLYQDHMQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGV
VNAMSRACREGELSTCGCSRAARPKDLPRDWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAG
RRTVYNLADVACKCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSP
DYCVRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448852
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448855
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448857
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Gene Symbol:WNT5A
Accession:XM_047448862
Location:EXON
Amino Acid Prediction: C to Y (nonsynonymous)
Amino Acid Position: 54
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLYSQLAGLSQGQKKLCHLYQDHMQYIGE
GAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPR
DWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQ
LADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGC
ELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK*

Variant Samples
Additional References at PubMed
PMID:24716670   PMID:25326635   PMID:25741868  


Additional Information

Database Acc Id Source(s)
ClinVar RCV000169741 CLINVAR
dbSNP (RS) rs786204837 CLINVAR
MedGen C4551475 CLINVAR
NCBI Gene WNT5A CLINVAR
OMIM 164975 CLINVAR
  180700 CLINVAR
OMIM Allele 164975.0004 CLINVAR