Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: LOU.BN-(rs65016308-D5Rat133)/Bbb

Symbol: LOU.BN-(rs65016308-D5Rat133)/Bbb
Strain: LOU.BN-(rs65016308-D5Rat133)
Substrain: Bbb
RGD ID: 8662933
Citation ID: RRID:RGD_8662933
Ontology ID: RS:0003793
Also Known As: LOU.BN-(rs65016308-D5Rat133)/Bbb; LOU.BN(chr5)D
Type: congenic
Available Source: Not Available
Origination: Max-Delbruck-Center for Molecular Medicine, Berlin, Germany
Description: this congenic strain is produced by backcrossing LOU.BN-(D5Rat59-D5Rat133)/Bbb to LOU/MBbb
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2547,797,856 - 47,798,053RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0548,652,724 - 48,652,920RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0553,233,142 - 53,233,338RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4549,696,057 - 49,696,253RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Protease inhibitor 15, a candidate gene for abdominal aortic internal elastic lamina ruptures in the rat. Falak S, etal., Physiol Genomics. 2014 Jun 15;46(12):418-28. doi: 10.1152/physiolgenomics.00004.2014. Epub 2014 May 1.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (rs65016308)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2510,898,113 - 10,898,113RGD
Rnor_6.0510,652,699 - 10,652,699RGD
Celera510,401,260 - 10,401,260RGD

Flank 2 / 1 (D5Rat133)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2547,797,856 - 47,798,053 (+)MAPPER
Rnor_6.0548,652,724 - 48,652,920NCBI
Rnor_5.0553,233,142 - 53,233,338UniSTS
RGSC_v3.4549,696,057 - 49,696,253UniSTS
Celera546,555,923 - 46,556,119UniSTS
SHRSP x BN Map531.7499UniSTS
SHRSP x BN Map531.7499RGD
Cytogenetic Map5q21UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics introgressed region is homozygous LOU segment that spans 0-10 Mb, had negligible number of ruptures of the internal elastic lamina (RIEL) even though had BN allele to 45 Mb 8662864