Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: LOU.BN-(D5Rat59-D5Rat127)/Bbb

Symbol: LOU.BN-(D5Rat59-D5Rat127)/Bbb
Strain: LOU.BN-(D5Rat59-D5Rat127)
Substrain: Bbb
RGD ID: 8662874
Citation ID: RRID:RGD_8662874
Ontology ID: RS:0003790
Also Known As: LOU.BN-(D5Rat59-D5Rat127)/Bbb; LOU.BN(chr5)A
Type: congenic
Available Source: Not Available
Origination: Max-Delbruck-Center for Molecular Medicine, Berlin, Germany
Description: this congenic strain is produced by backcrossing LOU.BN-(D5Rat59-D5Rat133)/Bbb to LOU/MBbb
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.252,282,226 - 26,607,972RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.051,666,587 - 26,713,119RGD_MAPPER_PIPELINERnor6.0
Rnor_5.051,662,934 - 31,408,200RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.451,368,223 - 27,586,431RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Protease inhibitor 15, a candidate gene for abdominal aortic internal elastic lamina ruptures in the rat. Falak S, etal., Physiol Genomics. 2014 Jun 15;46(12):418-28. doi: 10.1152/physiolgenomics.00004.2014. Epub 2014 May 1.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Rat59)
Rat AssemblyChrPosition (strand)Source
mRatBN7.252,282,226 - 2,282,446 (+)MAPPER
Rnor_6.051,666,587 - 1,666,805NCBI
Rnor_5.051,662,934 - 1,663,152UniSTS
RGSC_v3.451,368,224 - 1,368,442UniSTS
RGSC_v3.451,368,223 - 1,368,442RGD
RGSC_v3.151,368,224 - 1,368,442RGD
Celera51,917,196 - 1,917,414UniSTS
RH 3.4 Map50.0RGD
RH 3.4 Map50.0UniSTS
RH 2.0 Map50.0RGD
SHRSP x BN Map50.0RGD

Flank 2 / 1 (D5Rat127)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2526,607,784 - 26,607,972 (+)MAPPER
Rnor_6.0526,712,932 - 26,713,119NCBI
Rnor_5.0531,408,013 - 31,408,200UniSTS
RGSC_v3.4527,586,243 - 27,586,431RGD
RGSC_v3.4527,586,244 - 27,586,431UniSTS
RGSC_v3.1527,586,244 - 27,586,431RGD
Celera525,897,177 - 25,897,364UniSTS
RH 3.4 Map5153.1UniSTS
RH 3.4 Map5153.1RGD
SHRSP x BN Map517.09UniSTS
SHRSP x BN Map517.09RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics introgressed region spans 0-27 Mb, had high to moderate number of ruptures of the internal elastic lamina (RIEL) in abdominal aorta and common iliac arteries 8662864

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-06-26 LOU.BN-(D5Rat59-D5Rat127)/Bbb    LOU.BN-(D5Rat127-D5Rat133)/Bbb    Symbol updated 68687 APPROVED
2014-06-26 LOU.BN-(D5Rat59-D5Rat127)/Bbb    LOU.BN-(D5Rat127-D5Rat133)/Bbb    Name updated 68913 APPROVED
2014-06-26 LOU.BN-(D5Rat59-D5Rat127)/Bbb    LOU.BN-(D5Rat127-D5Rat133)/Bbb    Symbol updated 68687 APPROVED
2014-06-26 LOU.BN-(D5Rat59-D5Rat127)/Bbb    LOU.BN-(D5Rat127-D5Rat133)/Bbb    Name updated 68913 APPROVED