Strain Report - Rat Genome Database

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Strain: LOU.BN-(D5Rat59-D5Rat133)/Bbb

Symbol: LOU.BN-(D5Rat59-D5Rat133)/Bbb
Strain: LOU.BN-(D5Rat59-D5Rat133)
Substrain: Bbb
RGD ID: 8662861
Citation ID: RRID:RGD_8662861
Ontology ID: RS:0003788
Also Known As: LOU.BN(chr5); LOU.BN-(D5Rat59-D5Rat131)/Bbb; LOU.BN-(D5Rat59-D5Rat84)/Bbb; LOU.BN-(D5Rat59-D5Rat131)/Bbb; LOU.BN-(D5Rat59-D5Rat133)/Bbb
Type: congenic
Available Source: Not Available
Origination: Max-Delbruck-Center for Molecular Medicine, Berlin, Germany
Description: the desired chromosomal segment from BN/Rj was introgressed into the genetic background of LOU/MBbb
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.252,282,226 - 47,798,053RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.051,666,587 - 48,652,920RGD_MAPPER_PIPELINERnor6.0
Rnor_5.051,662,934 - 53,233,338RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.451,368,223 - 49,696,253RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
aneurysm  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. Protease inhibitor 15, a candidate gene for abdominal aortic internal elastic lamina ruptures in the rat. Falak S, etal., Physiol Genomics. 2014 Jun 15;46(12):418-28. doi: 10.1152/physiolgenomics.00004.2014. Epub 2014 May 1.
2. Quantitative genetic basis of arterial phenotypes in the Brown Norway rat. Kota L, etal., Physiol Genomics. 2007 Jun 19;30(1):17-25. Epub 2007 Mar 13.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Rat59)
Rat AssemblyChrPosition (strand)Source
mRatBN7.252,282,226 - 2,282,446 (+)MAPPER
Rnor_6.051,666,587 - 1,666,805NCBI
Rnor_5.051,662,934 - 1,663,152UniSTS
RGSC_v3.451,368,224 - 1,368,442UniSTS
RGSC_v3.451,368,223 - 1,368,442RGD
RGSC_v3.151,368,224 - 1,368,442RGD
Celera51,917,196 - 1,917,414UniSTS
RH 3.4 Map50.0RGD
RH 3.4 Map50.0UniSTS
RH 2.0 Map50.0RGD
SHRSP x BN Map50.0RGD

Flank 2 / 1 (D5Rat133)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2547,797,856 - 47,798,053 (+)MAPPER
Rnor_6.0548,652,724 - 48,652,920NCBI
Rnor_5.0553,233,142 - 53,233,338UniSTS
RGSC_v3.4549,696,057 - 49,696,253UniSTS
Celera546,555,923 - 46,556,119UniSTS
SHRSP x BN Map531.7499UniSTS
SHRSP x BN Map531.7499RGD
Cytogenetic Map5q21UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics introgressed region spans 50 Mb 8662864

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-06-26 LOU.BN-(D5Rat59-D5Rat133)/Bbb    LOU.BN-(D5Rat59-D5Rat131)/Bbb    Symbol updated 68687 APPROVED
2014-06-26 LOU.BN-(D5Rat59-D5Rat133)/Bbb    LOU.BN-(D5Rat59-D5Rat131)/Bbb    Name updated 68913 APPROVED
2014-06-26 LOU.BN-(D5Rat59-D5Rat133)/Bbb    LOU.BN-(D5Rat59-D5Rat131)/Bbb    Symbol updated 68687 APPROVED
2014-06-26 LOU.BN-(D5Rat59-D5Rat133)/Bbb    LOU.BN-(D5Rat59-D5Rat131)/Bbb    Name updated 68913 APPROVED