Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS.LEW-(D10Rat155-D10Chm171)/Ayd

Symbol: SS.LEW-(D10Rat155-D10Chm171)/Ayd
Strain: SS.LEW-(D10Rat155-D10Chm171)
Substrain: Ayd
RGD ID: 8657392
Citation ID: RRID:RGD_8657392
Ontology ID: RS:0003780
Also Known As: C10S.L33; SS.LEW-(D10Rat155-D10Chm171)/Ayd
Type: congenic
Available Source: Not Available
Origination: Research Centre, Centre Hospitalier de l'Universite de Montreal (CHUM), Montreal, Quebec, Canada
Description: A sub congenic strain derived from the progenitor strain SS.LEW-(D10Chm224-D10Chm6)/Ayd.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21066,978,955 - 67,750,281RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01069,385,595 - 70,167,191RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01069,020,437 - 69,797,898RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41070,229,781 - 71,032,765RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D10Rat155-D10Chm171)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
heart left ventricle size trait  EXP 8657382 RGD 

Disease Annotations     Click to see Annotation Detail View


References

References - curated
# Reference Title Reference Citation
1. Unique quantitative trait loci in synergy permanently improve diastolic dysfunction. Chauvet C, etal., Can J Cardiol. 2013 Oct;29(10):1302-9. doi: 10.1016/j.cjca.2013.03.012. Epub 2013 Jun 14.
2. Genetics of systolic and diastolic heart failure. Deng AY J Hypertens. 2015 Jan;33(1):3-13. doi: 10.1097/HJH.0000000000000400.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat155)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21066,978,955 - 66,979,128 (+)MAPPER
Rnor_6.01069,385,595 - 69,385,767NCBI
Rnor_5.01069,020,437 - 69,020,609UniSTS
RGSC_v3.41070,229,781 - 70,229,954RGD
RGSC_v3.41070,229,782 - 70,229,954UniSTS
RGSC_v3.11070,243,404 - 70,243,577RGD
Celera1065,926,485 - 65,926,657UniSTS
RH 2.0 Map10667.6RGD
SHRSP x BN Map1047.6399RGD

Flank 2 / 1 (D10Chm171)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21067,750,049 - 67,750,281 (+)MAPPER
Rnor_6.01070,166,960 - 70,167,191NCBI
Rnor_5.01069,797,667 - 69,797,898UniSTS
RGSC_v3.41071,032,534 - 71,032,765UniSTS
Celera1066,694,510 - 66,694,687UniSTS
Cytogenetic Map10q26UniSTS
Strain QTL Data
Symbol Name Trait
Bp374 Blood pressure QTL 374 heart left ventricle size trait   (VT:0002753)    

Additional Information