Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: WAG.OXYS-(D1Rat219-D1Rat81)/Nov

Symbol: WAG.OXYS-(D1Rat219-D1Rat81)/Nov
Strain: WAG.OXYS-(D1Rat219-D1Rat81)
Substrain: Nov
RGD ID: 8655663
Citation ID: RRID:RGD_8655663
Ontology ID: RS:0003770
Alleles: Snurf;   Ifit1;   Col17a1;   Gtf3c1;   Zp2
Also Known As: WAG.OXYS-(D1Rat219-D1Rat81)/Nov; WAG/OXYS-1.2
Type: congenic
Available Source: Not Available
Origination: Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia
Description: desired region was introgressed from OXYS/Nov into the genetic background of WAG/Nov by first intercrossing and then backcrossing to WAG/Nov
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21183,970,203 - 243,914,901RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01202,571,665 - 264,802,994RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01209,588,496 - 272,245,383RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41188,654,686 - 250,119,874RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Quantitative trait loci on chromosome 1 for cataract and AMD-like retinopathy in senescence-accelerated OXYS rats. Korbolina EE, etal., Aging (Albany NY). 2012 Jan;4(1):49-59.
2. Application of quantitative trait locus mapping and transcriptomics to studies of the senescence-accelerated phenotype in rats. Korbolina EE, etal., BMC Genomics. 2014 Dec 19;15 Suppl 12:S3. doi: 10.1186/1471-2164-15-S12-S3. Epub 2014 Dec 19.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Rat219)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21183,970,203 - 183,970,443 (+)MAPPER
Rnor_6.01202,571,665 - 202,571,904NCBI
Rnor_5.01209,588,496 - 209,588,735UniSTS
RGSC_v3.41188,654,686 - 188,654,926RGD
RGSC_v3.41188,654,687 - 188,654,926UniSTS
RGSC_v3.11188,804,568 - 188,804,807RGD
Celera1181,604,272 - 181,604,511UniSTS
RH 2.0 Map1972.1RGD
SHRSP x BN Map194.8399RGD

Flank 2 / 1 (D1Rat81)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21243,914,732 - 243,914,901 (+)MAPPER
Rnor_6.01264,802,828 - 264,802,994NCBI
Rnor_5.01272,245,217 - 272,245,383UniSTS
RGSC_v3.41250,119,666 - 250,119,874RGD
RGSC_v3.41250,119,672 - 250,119,838UniSTS
RGSC_v3.11250,380,235 - 250,380,443RGD
Celera1239,725,843 - 239,726,008UniSTS
SHRSP x BN Map1139.1099RGD
SHRSP x BN Map1139.1099UniSTS
FHH x ACI Map1129.1499RGD
Cytogenetic Map1q54UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease at the age 1.5-2 months 76% showed first stage of cataract, 9% showed second stage and 41% showed first stage of retinopathy; at 3-4 months 34% showed second stage, 100% showed first stage and 97% showed first stage of retinopathy 7794750