Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: DA.PVG.1AV1-(D4Rat63-D4Rat84)/Kiru

Symbol: DA.PVG.1AV1-(D4Rat63-D4Rat84)/Kiru
Strain: DA.PVG.1AV1-(D4Rat63-D4Rat84)
RGD ID: 8551874
Citation ID: RRID:RGD_8551874
Ontology ID: RS:0003689
Also Known As: DA.PVG.1AV1-(D4Rat63-D4Rat84)/Kiru; DA.R5(PVG.1AV1)
Type: congenic
Available Source: Not Available
Origination: Center for Molecular Medicine, Karolinska Institute, Stockholm, Sweden
Description: Congenic substrain derived from marker assisted selection for PVG.1AV1/Kini chromosome 4 alleles on the DA/ZtmKini recipient strain.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24153,274,175 - 180,699,135RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04152,598,827 - 182,171,018RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04219,683,260 - 246,313,537RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44156,442,644 - 185,398,530RGD_MAPPER_PIPELINERGSC3.4





Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "DA.PVG.1AV1-(D4Rat63-D4Rat84)/Kiru" (RS:0003689)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:
References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. High resolution mapping of an arthritis susceptibility locus on rat chromosome 4, and characterization of regulated phenotypes. Ribbhammar U, etal., Hum Mol Genet 2003 Sep 1;12(17):2087-96.

Region

Position Markers

Flank 1 / 1 (D4Rat63)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24153,274,175 - 153,274,330 (+)MAPPER
Rnor_6.04152,598,827 - 152,598,981NCBI
Rnor_5.04219,683,260 - 219,683,414UniSTS
RGSC_v3.44156,442,645 - 156,442,799UniSTS
RGSC_v3.44156,442,644 - 156,442,799RGD
RGSC_v3.14156,687,486 - 156,687,640RGD
Celera4142,126,200 - 142,126,354UniSTS
RH 3.4 Map4981.1RGD
RH 3.4 Map4981.1UniSTS
RH 2.0 Map4972.6RGD
SHRSP x BN Map477.0299RGD

Flank 2 / 1 (D4Rat84)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24180,699,020 - 180,699,135 (+)MAPPER
Rnor_6.04182,170,904 - 182,171,018NCBI
Rnor_5.04246,313,423 - 246,313,537UniSTS
RGSC_v3.44185,398,416 - 185,398,530UniSTS
RGSC_v3.44185,398,415 - 185,398,530RGD
RGSC_v3.14185,643,540 - 185,643,654RGD
Celera4169,180,864 - 169,180,990UniSTS
RH 3.4 Map41096.4RGD
RH 3.4 Map41096.4UniSTS
SHRSP x BN Map499.9UniSTS
SHRSP x BN Map499.9RGD
FHH x ACI Map4113.49RGD

Additional Information