Strain Report - Rat Genome Database

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Strain: SHRSP.WKY-(D3Mgh16-D3Rat114)/Gcrc

Symbol: SHRSP.WKY-(D3Mgh16-D3Rat114)/Gcrc
Strain: SHRSP.WKY-(D3Mgh16-D3Rat114)
Substrain: Gcrc
RGD ID: 7411676
Citation ID: RRID:RGD_7411676
Ontology ID: RS:0003568
Also Known As: SP.WKYGla3a; SHRSP.WKY-(D3Mgh16-D3Rat114)/Gcrc
Type: congenic
Available Source: Not Available
Origination: University of Glasgow, Western Infirmary, Glasgow, UK
Description: Congenic strain created by speed congenic strategy where the desired region from Chromosome 3 of WKY/Gcrc was introgressed into the SHRSP/Gcrc background.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,778,704 - 147,415,807RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.036,000,748 - 155,263,151RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0311,361,699 - 160,347,840RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.436,373,335 - 149,496,698RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Interaction between chromosome 2 and 3 regulates pulse pressure in the stroke-prone spontaneously hypertensive rat. Koh-Tan HH, etal., Hypertension. 2013 Jul;62(1):33-40. doi: 10.1161/HYPERTENSIONAHA.111.00814. Epub 2013 May 6.
2. Dissecting the genetic components of a quantitative trait locus for blood pressure and renal pathology on rat chromosome 3. Koh-Tan HH, etal., J Hypertens. 2017 Feb;35(2):319-329. doi: 10.1097/HJH.0000000000001155.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Mgh16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,778,704 - 10,778,823 (+)MAPPER
Rnor_6.036,000,748 - 6,000,866NCBI
Rnor_5.0311,361,699 - 11,361,817UniSTS
RGSC_v3.436,373,335 - 6,373,454RGD
RGSC_v3.436,373,336 - 6,373,454UniSTS
RGSC_v3.136,373,636 - 6,373,754RGD
Celera35,573,283 - 5,573,401UniSTS
RH 3.4 Map316.9UniSTS
RH 3.4 Map316.9RGD
Cytogenetic Map3p12UniSTS

Flank 2 / 1 (D3Rat114)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23147,415,594 - 147,415,807 (+)MAPPER
Rnor_6.03155,262,939 - 155,263,151NCBI
Rnor_5.03160,347,628 - 160,347,840UniSTS
RGSC_v3.43149,496,486 - 149,496,698UniSTS
RGSC_v3.43149,496,485 - 149,496,698RGD
RGSC_v3.13149,402,395 - 149,402,607RGD
Celera3146,112,164 - 146,112,376UniSTS
RH 3.4 Map31360.0RGD
RH 3.4 Map31360.0UniSTS
RH 2.0 Map3919.7RGD
SHRSP x BN Map375.5198RGD
FHH x ACI Map388.0299RGD
Cytogenetic Map3q42UniSTS

Additional Information