Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: P.NP-(Snca-D4Rat35)/Iusm

Symbol: P.NP-(Snca-D4Rat35)/Iusm
Strain: P.NP-(Snca-D4Rat35)
Substrain: Iusm
RGD ID: 7394821
Citation ID: RRID:RGD_7394821
Ontology ID: RS:0003562
Also Known As: interval-specific congenic strain B; ISCS-B; P.NP-(Snca-D4Rat35)/Iusm
Type: congenic
Available Source: Not Available
Origination: Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana
Description: P.NP-(D4Rat119-D4Rat55)/Iusm and iP rats were crossed to get F1 animals which were further backcrossed to P rats for 10 generations, this was followed by intercross to generate the congenic strains, these animals were selected by marker-assisted selection
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2489,696,420 - 91,366,774RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0490,782,412 - 92,490,285RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04155,592,411 - 157,297,332RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4489,613,731 - 91,336,908RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Quantitative trait locus for body weight identified on rat chromosome 4 in inbred alcohol-preferring and -nonpreferring rats: potential implications for neuropeptide Y and corticotrophin releasing hormone 2. Spence JP, etal., Alcohol. 2013 Feb;47(1):63-7. doi: 10.1016/j.alcohol.2012.10.005.

Region

Position Markers

Flank 2 / 1 (D4Rat35)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2491,366,610 - 91,366,774 (+)MAPPER
Rnor_6.0492,490,122 - 92,490,285NCBI
Rnor_5.04157,297,169 - 157,297,332UniSTS
RGSC_v3.4491,336,647 - 91,336,908RGD
RGSC_v3.4491,336,666 - 91,336,829UniSTS
RGSC_v3.1491,581,091 - 91,581,254RGD
Celera486,140,829 - 86,140,992UniSTS
RH 3.4 Map4573.9UniSTS
RH 3.4 Map4573.9RGD
SHRSP x BN Map444.21UniSTS
SHRSP x BN Map444.21RGD

Flank 1 / 1 (Snca)
Rat AssemblyChrPosition (strand)Source
GRCr8491,026,474 - 91,127,444 (-)NCBI
mRatBN7.2489,696,420 - 89,797,240 (-)NCBI
mRatBN7.2 Ensembl489,696,420 - 89,796,262 (-)Ensembl
UTH_Rnor_SHR_Utx494,908,873 - 95,008,815 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0490,684,174 - 90,784,124 (-)NCBI
UTH_Rnor_WKY_Bbb_1.0489,081,018 - 89,195,868 (-)NCBI
Rnor_6.0490,782,412 - 90,883,236 (-)NCBI
Rnor_6.0 Ensembl490,782,374 - 90,882,285 (-)Ensembl
Rnor_5.04155,592,411 - 155,690,724 (-)NCBI
RGSC_v3.4489,613,731 - 89,722,807 (-)NCBI
RGSC_v3.1489,858,155 - 89,967,232 (-)NCBI
Celera484,478,545 - 84,578,894 (-)NCBI
Cytogenetic Map4q24NCBI

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-05 P.NP-(Snca-D4Rat35)/Iusm    P.NP-(Snca-D4Rat35)/Iusm    Name updated 68913 APPROVED
2013-11-05 P.NP-(Snca-D4Rat35)/Iusm    P.NP-(Snca-D4Rat35)/Iusm    Name updated 68913 APPROVED