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Strain Registration

Strain: P.NP-(Snca-D4Rat35)/Iusm

Symbol: P.NP-(Snca-D4Rat35)/Iusm
Strain: P.NP-(Snca-D4Rat35)
Substrain: Iusm
RGD ID: 7394821
Citation ID: RRID:RGD_7394821
Ontology ID: RS:0003562
Also Known As: interval-specific congenic strain B; ISCS-B; P.NP-(Snca-D4Rat35)/Iusm
Type: congenic
Available Source: Not Available
Origination: Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana
Description: P.NP-(D4Rat119-D4Rat55)/Iusm and iP rats were crossed to get F1 animals which were further backcrossed to P rats for 10 generations, this was followed by intercross to generate the congenic strains, these animals were selected by marker-assisted selection
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2489,696,420 - 91,366,774RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0490,782,412 - 92,490,285RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04155,592,411 - 157,297,332RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4489,613,731 - 91,336,908RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Quantitative trait locus for body weight identified on rat chromosome 4 in inbred alcohol-preferring and -nonpreferring rats: potential implications for neuropeptide Y and corticotrophin releasing hormone 2. Spence JP, etal., Alcohol. 2013 Feb;47(1):63-7. doi: 10.1016/j.alcohol.2012.10.005.

Region

Position Markers

Flank 2 / 1 (D4Rat35)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2491,366,610 - 91,366,774 (+)MAPPER
Rnor_6.0492,490,122 - 92,490,285NCBI
Rnor_5.04157,297,169 - 157,297,332UniSTS
RGSC_v3.4491,336,647 - 91,336,908RGD
RGSC_v3.4491,336,666 - 91,336,829UniSTS
RGSC_v3.1491,581,091 - 91,581,254RGD
Celera486,140,829 - 86,140,992UniSTS
RH 3.4 Map4573.9UniSTS
RH 3.4 Map4573.9RGD
SHRSP x BN Map444.21UniSTS
SHRSP x BN Map444.21RGD

Flank 1 / 1 (Snca)
Rat AssemblyChrPosition (strand)Source
GRCr8491,026,474 - 91,127,444 (-)NCBI
mRatBN7.2489,696,420 - 89,797,240 (-)NCBI
mRatBN7.2 Ensembl489,696,420 - 89,796,262 (-)Ensembl
UTH_Rnor_SHR_Utx494,908,873 - 95,008,815 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0490,684,174 - 90,784,124 (-)NCBI
UTH_Rnor_WKY_Bbb_1.0489,081,018 - 89,195,868 (-)NCBI
Rnor_6.0490,782,412 - 90,883,236 (-)NCBI
Rnor_6.0 Ensembl490,782,374 - 90,882,285 (-)Ensembl
Rnor_5.04155,592,411 - 155,690,724 (-)NCBI
RGSC_v3.4489,613,731 - 89,722,807 (-)NCBI
RGSC_v3.1489,858,155 - 89,967,232 (-)NCBI
Celera484,478,545 - 84,578,894 (-)NCBI
Cytogenetic Map4q24NCBI

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-05 P.NP-(Snca-D4Rat35)/Iusm    P.NP-(Snca-D4Rat35)/Iusm    Name updated 68913 APPROVED
2013-11-05 P.NP-(Snca-D4Rat35)/Iusm    P.NP-(Snca-D4Rat35)/Iusm    Name updated 68913 APPROVED