Strain Report - Rat Genome Database

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Strain: BN.SHR-(Il6-Cd36)/Cub

Symbol: BN.SHR-(Il6-Cd36)/Cub
Strain: BN.SHR-(Il6-Cd36)
Substrain: Cub
RGD ID: 728142
RRID: RGD_728142
Ontology ID: RS:0000129
Also known as: BN.SHR4; BN.SHR-(Il6-Cd36)/Cub; BN-SHR4
Type: congenic
Source: Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University in Prague, Prague, Czech Republic
Origin: This congenic strain has a segment of chr 4 which was of SHR origin. The length of the differential segment is 10 cM and has a defective cd36 allele of SHR.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.245,214,602 - 17,410,084RGD_MAPPER_PIPELINE
Rnor_6.043,043,231 - 14,191,498RGD_MAPPER_PIPELINERnor6.0
Rnor_5.043,095,536 - 14,166,434RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44456,799 - 13,554,416RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References


Region

Position Markers

Flank 1 / 1 (Il6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.245,214,602 - 5,219,178 (-)NCBI
Rnor_6.0 Ensembl43,043,231 - 3,047,807 (+)Ensembl
Rnor_6.043,043,231 - 3,047,807 (+)NCBI
Rnor_5.043,095,536 - 3,100,112 (+)NCBI
RGSC_v3.44456,799 - 461,376 (-)NCBI
RGSC_v3.14456,798 - 461,376 (-)NCBI
Celera45,093,593 - 5,098,169 (+)NCBI
Cytogenetic Map4q11NCBI

Flank 2 / 1 (Cd36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2417,317,343 - 17,410,084 (+)NCBI
Rnor_6.0 Ensembl414,001,761 - 14,249,749 (+)Ensembl
Rnor_6.0414,150,309 - 14,191,498 (+)NCBI
Rnor_5.0414,125,297 - 14,166,434 (+)NCBI
RGSC_v3.4413,534,582 - 13,554,416 (+)NCBI
Celera412,880,238 - 12,941,086 (+)NCBI
Cytogenetic Map4q11NCBI

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Shows a significant increase in triglyceride level when fed a high-sucrose diet for 1 week. 632347
strain_life_disease This region is important for dyslipidemia and insulin resistance. 632347