Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: ACI.BN-(D7Uwm28-D7Mit16)/Shul

Symbol: ACI.BN-(D7Uwm28-D7Mit16)/Shul
Strain: ACI.BN-(D7Uwm28-D7Mit16)
Substrain: Shul
RGD ID: 7248748
Citation ID: RRID:RGD_7248748
Ontology ID: RS:0003461
Also Known As: ACI.BN-(D7Uwm28-D7Mit16)/Shul; Emca4c2; Ept7.3
Type: congenic
Available Source: Not Available
Origination: Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison
Description: This congenic strain contains a region of BN/SsNHsd chromosome 7 transferred to the ACI/SegHsd strain background.
Genetic Status: Homozygous
Coat Color: Agouti
Last Known Status: Cryopreserved Sperm (as of 2017-09-07)
Research Usage mammary cancer
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27113,886,156 - 113,886,318RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.07123,602,837 - 123,602,998RGD_MAPPER_PIPELINERnor6.0
Rnor_5.07123,587,556 - 123,587,717RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.47120,745,845 - 120,746,007RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. James D. Shull's group Personal communication between Dr. James D. Shull's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Uwm28)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map7 RGD

Flank 2 / 1 (D7Mit16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27113,886,156 - 113,886,318 (+)MAPPER
Rnor_6.07123,602,837 - 123,602,998NCBI
Rnor_5.07123,587,556 - 123,587,717UniSTS
RGSC_v3.47120,745,845 - 120,746,007RGD
RGSC_v3.47120,745,846 - 120,746,007UniSTS
RGSC_v3.17120,780,075 - 120,780,237RGD
Celera7110,200,995 - 110,201,156UniSTS
RH 3.4 Map7898.9UniSTS
RH 3.4 Map7898.9RGD
RH 2.0 Map7684.1RGD
Cytogenetic Map7q34UniSTS

Additional Information