Strain Report - Rat Genome Database

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Strain: DA.BN-(D9Got8-D9Rat139)/Kini

Symbol: DA.BN-(D9Got8-D9Rat139)/Kini
Strain: DA.BN-(D9Got8-D9Rat139)
Substrain: Kini
RGD ID: 7241242
Citation ID: RRID:RGD_7241242
Ontology ID: RS:0003404
Previously known as: DA.BN-(D9Got8-D9Rat139)/Kini; R33
Type: congenic
Source: Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden
Origin: DA/ZtmKini females were mated with BN/Rj males, speed congenic strategy was used to generate these congenics; when the donor genome outside of the congenic segment was removed, two heterozygous animals were intercrossed to produce homozygous rats
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.294,301,731 - 5,859,822RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.092,657,610 - 3,308,009RGD_MAPPER_PIPELINERnor6.0
Rnor_5.092,597,055 - 37,252,772RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.492,174,611 - 3,811,711RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. A role for VAV1 in experimental autoimmune encephalomyelitis and multiple sclerosis. Jagodic M, etal., Sci Transl Med. 2009 Dec 9;1(10):10ra21. doi: 10.1126/scitranslmed.3000278.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D9Got8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.294,301,731 - 4,302,019 (-)MAPPER
Rnor_6.092,657,610 - 2,657,895NCBI
Rnor_5.092,597,055 - 2,597,340UniSTS
RGSC_v3.493,811,425 - 3,811,708RGD
RGSC_v3.493,811,426 - 3,811,711UniSTS
RGSC_v3.193,811,425 - 3,811,708RGD
Celera91,200,453 - 1,200,738UniSTS

Flank 2 / 1 (D9Rat139)
Rat AssemblyChrPosition (strand)Source
mRatBN7.295,859,695 - 5,859,822 (-)MAPPER
Rnor_6.093,307,883 - 3,308,009NCBI
Rnor_5.0937,252,646 - 37,252,772UniSTS
RGSC_v3.492,174,611 - 2,174,738RGD
RGSC_v3.492,174,612 - 2,174,738UniSTS
RGSC_v3.192,174,611 - 2,174,738RGD
Celera92,721,612 - 2,721,738UniSTS
SHRSP x BN Map91.2299UniSTS
SHRSP x BN Map91.2299RGD
Cytogenetic Map9q11UniSTS

Additional Information