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Symbol:

WF.COP-(D2Uwm17-D2Rat16)/Uwm

Strain:

WF.COP-(D2Uwm17-D2Rat16)

Substrain:

Uwm

RGD ID:

6903904

Citation ID:

RRID:RGD_6903904

Ontology ID:

RS:0003330

Also Known As:

WF.COP-(D2Uwm17-D2Rat16)/Uwm; WF.COP-D2Uwm17/D2Rat16; line T

Type:

congenic

Available Source:

Not Available

Origination:

University of Wisconsin, Madison, Wisconsin, USA

Description:

A segment of chromosome 2 was transferred from COP into the WF background.

Inbred Generations:

F10

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	32,373,770 - 43,665,178	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	2	31,224,612 - 43,643,900	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	2	50,381,686 - 62,691,053	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	2	32,051,319 - 43,376,636	RGD_MAPPER_PIPELINE	RGSC3.4

References

References - curated

#	Reference Title	Reference Citation
1.	Congenic rats reveal three independent Copenhagen alleles within the Mcs1 quantitative trait locus that confer resistance to mammary cancer.	Haag JD, etal., Cancer Res 2003 Sep 15;63(18):5808-12.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Uwm17)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	32,373,770 - 32,374,088 (+)	MAPPER
Rnor_6.0	2	31,224,612 - 31,224,929	NCBI
Rnor_5.0	2	50,381,686 - 50,382,003	UniSTS
RGSC_v3.4	2	32,051,319 - 32,051,634	RGD
RGSC_v3.4	2	32,051,320 - 32,051,637	UniSTS
RGSC_v3.1	2	31,971,688 - 31,972,003	RGD
Celera	2	28,374,451 - 28,374,776	UniSTS
Cytogenetic Map	2		RGD

Flank 2 / 1 (D2Rat16)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	43,665,008 - 43,665,178 (+)	MAPPER
Rnor_6.0	2	43,643,731 - 43,643,900	NCBI
Rnor_5.0	2	62,690,884 - 62,691,053	UniSTS
RGSC_v3.4	2	43,376,466 - 43,376,635	RGD
RGSC_v3.4	2	43,376,467 - 43,376,636	UniSTS
RGSC_v3.1	2	43,304,699 - 43,304,868	RGD
Celera	2	39,447,656 - 39,447,823	UniSTS
RH 3.4 Map	2	190.2	UniSTS
RH 3.4 Map	2	190.2	RGD
RH 2.0 Map	2	245.7	RGD
SHRSP x BN Map	2	18.4498	RGD
FHH x ACI Map	2	25.2699	RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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